Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0322

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0321 and Echvi_0322 overlap by 26 nucleotidesEchvi_0322 and Echvi_0323 are separated by 70 nucleotides Echvi_0321: Echvi_0321 - Glycerol-3-phosphate O-acyltransferase, at 334,654 to 336,354 _0321 Echvi_0322: Echvi_0322 - Glycerol-3-phosphate dehydrogenase, at 336,329 to 337,393 _0322 Echvi_0323: Echvi_0323 - Gluconolactonase, at 337,464 to 338,357 _0323 Position (kb) 336 337 338Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 335.355 kb on + strand, within Echvi_0321at 335.583 kb on + strand, within Echvi_0321at 335.583 kb on + strand, within Echvi_0321at 335.583 kb on + strand, within Echvi_0321at 335.583 kb on + strand, within Echvi_0321at 335.583 kb on + strand, within Echvi_0321at 335.585 kb on + strand, within Echvi_0321at 335.586 kb on - strand, within Echvi_0321at 335.586 kb on - strand, within Echvi_0321at 335.623 kb on + strand, within Echvi_0321at 335.623 kb on + strand, within Echvi_0321at 335.623 kb on + strand, within Echvi_0321at 335.623 kb on + strand, within Echvi_0321at 335.623 kb on + strand, within Echvi_0321at 335.631 kb on + strand, within Echvi_0321at 335.689 kb on + strand, within Echvi_0321at 335.692 kb on + strand, within Echvi_0321at 335.692 kb on + strand, within Echvi_0321at 335.722 kb on + strand, within Echvi_0321at 335.812 kb on + strand, within Echvi_0321at 335.835 kb on + strand, within Echvi_0321at 335.853 kb on + strand, within Echvi_0321at 335.853 kb on + strand, within Echvi_0321at 335.853 kb on + strand, within Echvi_0321at 335.895 kb on - strand, within Echvi_0321at 335.895 kb on - strand, within Echvi_0321at 335.895 kb on - strand, within Echvi_0321at 335.900 kb on + strand, within Echvi_0321at 335.900 kb on + strand, within Echvi_0321at 335.900 kb on + strand, within Echvi_0321at 335.900 kb on + strand, within Echvi_0321at 335.900 kb on + strand, within Echvi_0321at 335.900 kb on + strand, within Echvi_0321at 335.900 kb on + strand, within Echvi_0321at 335.901 kb on - strand, within Echvi_0321at 335.901 kb on - strand, within Echvi_0321at 335.901 kb on - strand, within Echvi_0321at 335.901 kb on - strand, within Echvi_0321at 335.923 kb on + strand, within Echvi_0321at 335.923 kb on + strand, within Echvi_0321at 335.923 kb on + strand, within Echvi_0321at 335.924 kb on - strand, within Echvi_0321at 336.233 kb on - strandat 336.301 kb on + strandat 336.301 kb on + strandat 336.302 kb on - strandat 336.302 kb on - strandat 336.307 kb on + strandat 336.580 kb on - strand, within Echvi_0322at 336.912 kb on - strand, within Echvi_0322at 337.154 kb on + strand, within Echvi_0322at 337.327 kb on + strandat 337.346 kb on + strandat 337.346 kb on + strandat 337.349 kb on + strandat 337.350 kb on - strandat 337.626 kb on + strand, within Echvi_0323at 337.626 kb on + strand, within Echvi_0323at 337.626 kb on + strand, within Echvi_0323at 337.656 kb on + strand, within Echvi_0323at 337.657 kb on - strand, within Echvi_0323at 337.657 kb on - strand, within Echvi_0323at 337.692 kb on + strand, within Echvi_0323at 337.693 kb on - strand, within Echvi_0323at 337.725 kb on + strand, within Echvi_0323at 337.889 kb on + strand, within Echvi_0323at 337.902 kb on + strand, within Echvi_0323at 337.903 kb on - strand, within Echvi_0323at 337.956 kb on + strand, within Echvi_0323at 337.957 kb on - strand, within Echvi_0323at 338.080 kb on - strand, within Echvi_0323at 338.126 kb on - strand, within Echvi_0323at 338.179 kb on - strand, within Echvi_0323at 338.179 kb on - strand, within Echvi_0323at 338.179 kb on - strand, within Echvi_0323at 338.179 kb on - strand, within Echvi_0323at 338.323 kb on - strandat 338.323 kb on - strandat 338.336 kb on - strandat 338.355 kb on + strandat 338.356 kb on - strandat 338.378 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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335,355 + Echvi_0321 0.41 +2.5
335,583 + Echvi_0321 0.55 +0.5
335,583 + Echvi_0321 0.55 -1.0
335,583 + Echvi_0321 0.55 -1.1
335,583 + Echvi_0321 0.55 -1.2
335,583 + Echvi_0321 0.55 -0.1
335,585 + Echvi_0321 0.55 -0.9
335,586 - Echvi_0321 0.55 +0.6
335,586 - Echvi_0321 0.55 -0.4
335,623 + Echvi_0321 0.57 -0.9
335,623 + Echvi_0321 0.57 -0.7
335,623 + Echvi_0321 0.57 -0.4
335,623 + Echvi_0321 0.57 +1.3
335,623 + Echvi_0321 0.57 -0.4
335,631 + Echvi_0321 0.57 -0.4
335,689 + Echvi_0321 0.61 -2.5
335,692 + Echvi_0321 0.61 +0.1
335,692 + Echvi_0321 0.61 -0.1
335,722 + Echvi_0321 0.63 -0.1
335,812 + Echvi_0321 0.68 -0.7
335,835 + Echvi_0321 0.69 -1.0
335,853 + Echvi_0321 0.70 -1.6
335,853 + Echvi_0321 0.70 +0.0
335,853 + Echvi_0321 0.70 +0.3
335,895 - Echvi_0321 0.73 +0.1
335,895 - Echvi_0321 0.73 +0.8
335,895 - Echvi_0321 0.73 +1.1
335,900 + Echvi_0321 0.73 +1.1
335,900 + Echvi_0321 0.73 -0.5
335,900 + Echvi_0321 0.73 -1.4
335,900 + Echvi_0321 0.73 +0.3
335,900 + Echvi_0321 0.73 -0.3
335,900 + Echvi_0321 0.73 +1.1
335,900 + Echvi_0321 0.73 -0.5
335,901 - Echvi_0321 0.73 +1.3
335,901 - Echvi_0321 0.73 +0.9
335,901 - Echvi_0321 0.73 +0.3
335,901 - Echvi_0321 0.73 -0.7
335,923 + Echvi_0321 0.75 -0.4
335,923 + Echvi_0321 0.75 -0.1
335,923 + Echvi_0321 0.75 +0.2
335,924 - Echvi_0321 0.75 -1.7
336,233 - +1.3
336,301 + -2.0
336,301 + -1.3
336,302 - +1.0
336,302 - +0.9
336,307 + +0.2
336,580 - Echvi_0322 0.24 -0.9
336,912 - Echvi_0322 0.55 -0.1
337,154 + Echvi_0322 0.77 +0.9
337,327 + +3.1
337,346 + -0.1
337,346 + +1.2
337,349 + +1.6
337,350 - -0.3
337,626 + Echvi_0323 0.18 -0.7
337,626 + Echvi_0323 0.18 -0.9
337,626 + Echvi_0323 0.18 -1.4
337,656 + Echvi_0323 0.21 +0.4
337,657 - Echvi_0323 0.22 -0.5
337,657 - Echvi_0323 0.22 -3.8
337,692 + Echvi_0323 0.26 -1.4
337,693 - Echvi_0323 0.26 +0.0
337,725 + Echvi_0323 0.29 -0.7
337,889 + Echvi_0323 0.48 +0.1
337,902 + Echvi_0323 0.49 +0.3
337,903 - Echvi_0323 0.49 -0.7
337,956 + Echvi_0323 0.55 -0.2
337,957 - Echvi_0323 0.55 -2.4
338,080 - Echvi_0323 0.69 -0.8
338,126 - Echvi_0323 0.74 -0.2
338,179 - Echvi_0323 0.80 +0.0
338,179 - Echvi_0323 0.80 -0.5
338,179 - Echvi_0323 0.80 -0.2
338,179 - Echvi_0323 0.80 -0.9
338,323 - +0.0
338,323 - +1.1
338,336 - -0.5
338,355 + +1.9
338,356 - -0.7
338,378 + +0.4

Or see this region's nucleotide sequence