Experiment: m.b. D-Cycloserine 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_20690 and CA264_20695 are separated by 74 nucleotides CA264_20695 and CA264_20700 are separated by 90 nucleotides CA264_20700 and CA264_20705 are separated by 118 nucleotides
CA264_20690: CA264_20690 - methylmalonyl-CoA mutase, at 4,762,733 to 4,764,877
_20690
CA264_20695: CA264_20695 - methylmalonyl-CoA mutase, at 4,764,952 to 4,766,796
_20695
CA264_20700: CA264_20700 - hypothetical protein, at 4,766,887 to 4,767,267
_20700
CA264_20705: CA264_20705 - N-acyl-L-amino acid amidohydrolase, at 4,767,386 to 4,768,720
_20705
Position (kb)
4764
4765
4766
4767 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4763.971 kb on + strand, within CA264_20690 at 4763.971 kb on + strand, within CA264_20690 at 4763.972 kb on - strand, within CA264_20690 at 4764.019 kb on + strand, within CA264_20690 at 4764.037 kb on + strand, within CA264_20690 at 4764.038 kb on - strand, within CA264_20690 at 4764.108 kb on + strand, within CA264_20690 at 4764.130 kb on + strand, within CA264_20690 at 4764.131 kb on - strand, within CA264_20690 at 4764.132 kb on + strand, within CA264_20690 at 4764.132 kb on + strand, within CA264_20690 at 4764.155 kb on - strand, within CA264_20690 at 4764.224 kb on - strand, within CA264_20690 at 4764.276 kb on + strand, within CA264_20690 at 4764.277 kb on - strand, within CA264_20690 at 4764.292 kb on + strand, within CA264_20690 at 4764.307 kb on + strand, within CA264_20690 at 4764.308 kb on - strand, within CA264_20690 at 4764.330 kb on - strand, within CA264_20690 at 4764.386 kb on - strand, within CA264_20690 at 4764.497 kb on + strand, within CA264_20690 at 4764.610 kb on + strand, within CA264_20690 at 4764.639 kb on + strand, within CA264_20690 at 4764.669 kb on + strand at 4764.669 kb on + strand at 4764.670 kb on - strand at 4764.670 kb on - strand at 4764.696 kb on + strand at 4764.697 kb on - strand at 4764.697 kb on - strand at 4764.840 kb on - strand at 4764.848 kb on + strand at 4764.848 kb on + strand at 4764.849 kb on - strand at 4764.849 kb on - strand at 4764.849 kb on - strand at 4764.850 kb on + strand at 4764.854 kb on + strand at 4764.855 kb on - strand at 4764.855 kb on - strand at 4764.891 kb on + strand at 4764.923 kb on - strand at 4764.923 kb on - strand at 4764.934 kb on + strand at 4764.960 kb on + strand at 4765.093 kb on + strand at 4765.093 kb on + strand at 4765.093 kb on + strand at 4765.094 kb on - strand at 4765.094 kb on - strand at 4765.094 kb on - strand at 4765.146 kb on + strand, within CA264_20695 at 4765.147 kb on - strand, within CA264_20695 at 4765.148 kb on + strand, within CA264_20695 at 4765.148 kb on + strand, within CA264_20695 at 4765.148 kb on + strand, within CA264_20695 at 4765.149 kb on - strand, within CA264_20695 at 4765.194 kb on + strand, within CA264_20695 at 4765.197 kb on + strand, within CA264_20695 at 4765.197 kb on + strand, within CA264_20695 at 4765.198 kb on - strand, within CA264_20695 at 4765.198 kb on - strand, within CA264_20695 at 4765.198 kb on - strand, within CA264_20695 at 4765.227 kb on + strand, within CA264_20695 at 4765.227 kb on + strand, within CA264_20695 at 4765.228 kb on - strand, within CA264_20695 at 4765.291 kb on + strand, within CA264_20695 at 4765.292 kb on - strand, within CA264_20695 at 4765.318 kb on - strand, within CA264_20695 at 4765.318 kb on - strand, within CA264_20695 at 4765.324 kb on + strand, within CA264_20695 at 4765.324 kb on + strand, within CA264_20695 at 4765.398 kb on - strand, within CA264_20695 at 4765.432 kb on + strand, within CA264_20695 at 4765.432 kb on + strand, within CA264_20695 at 4765.434 kb on + strand, within CA264_20695 at 4765.435 kb on - strand, within CA264_20695 at 4765.562 kb on - strand, within CA264_20695 at 4765.577 kb on + strand, within CA264_20695 at 4765.578 kb on - strand, within CA264_20695 at 4765.578 kb on - strand, within CA264_20695 at 4765.665 kb on - strand, within CA264_20695 at 4765.688 kb on - strand, within CA264_20695 at 4765.699 kb on + strand, within CA264_20695 at 4765.699 kb on + strand, within CA264_20695 at 4765.699 kb on + strand, within CA264_20695 at 4765.699 kb on + strand, within CA264_20695 at 4765.700 kb on - strand, within CA264_20695 at 4765.700 kb on - strand, within CA264_20695 at 4765.703 kb on + strand, within CA264_20695 at 4765.704 kb on - strand, within CA264_20695 at 4765.896 kb on + strand, within CA264_20695 at 4765.951 kb on + strand, within CA264_20695 at 4765.952 kb on - strand, within CA264_20695 at 4765.952 kb on - strand, within CA264_20695 at 4766.006 kb on + strand, within CA264_20695 at 4766.006 kb on + strand, within CA264_20695 at 4766.007 kb on - strand, within CA264_20695 at 4766.083 kb on - strand, within CA264_20695 at 4766.086 kb on + strand, within CA264_20695 at 4766.091 kb on - strand, within CA264_20695 at 4766.091 kb on - strand, within CA264_20695 at 4766.108 kb on - strand, within CA264_20695 at 4766.114 kb on + strand, within CA264_20695 at 4766.114 kb on + strand, within CA264_20695 at 4766.167 kb on + strand, within CA264_20695 at 4766.219 kb on - strand, within CA264_20695 at 4766.331 kb on - strand, within CA264_20695 at 4766.370 kb on + strand, within CA264_20695 at 4766.371 kb on - strand, within CA264_20695 at 4766.371 kb on - strand, within CA264_20695 at 4766.373 kb on - strand, within CA264_20695 at 4766.373 kb on - strand, within CA264_20695 at 4766.382 kb on + strand, within CA264_20695 at 4766.408 kb on - strand, within CA264_20695 at 4766.536 kb on + strand, within CA264_20695 at 4766.537 kb on - strand, within CA264_20695 at 4766.537 kb on - strand, within CA264_20695 at 4766.606 kb on - strand, within CA264_20695 at 4766.651 kb on - strand at 4766.666 kb on + strand at 4766.666 kb on + strand at 4766.666 kb on + strand at 4766.667 kb on - strand at 4766.667 kb on - strand at 4766.679 kb on + strand at 4766.680 kb on - strand at 4766.680 kb on - strand at 4766.834 kb on + strand at 4766.835 kb on - strand at 4766.835 kb on - strand at 4766.835 kb on - strand at 4766.836 kb on + strand at 4766.837 kb on - strand at 4766.841 kb on + strand at 4766.848 kb on + strand at 4766.866 kb on - strand at 4766.868 kb on - strand at 4766.881 kb on + strand at 4766.941 kb on + strand, within CA264_20700 at 4766.942 kb on - strand, within CA264_20700 at 4766.944 kb on + strand, within CA264_20700 at 4766.944 kb on + strand, within CA264_20700 at 4766.945 kb on - strand, within CA264_20700 at 4766.946 kb on + strand, within CA264_20700 at 4766.946 kb on + strand, within CA264_20700 at 4766.947 kb on - strand, within CA264_20700 at 4767.015 kb on - strand, within CA264_20700 at 4767.097 kb on + strand, within CA264_20700 at 4767.098 kb on - strand, within CA264_20700 at 4767.098 kb on - strand, within CA264_20700 at 4767.100 kb on - strand, within CA264_20700 at 4767.109 kb on - strand, within CA264_20700 at 4767.153 kb on + strand, within CA264_20700 at 4767.161 kb on - strand, within CA264_20700 at 4767.210 kb on - strand, within CA264_20700 at 4767.210 kb on - strand, within CA264_20700 at 4767.210 kb on - strand, within CA264_20700 at 4767.210 kb on - strand, within CA264_20700 at 4767.216 kb on + strand, within CA264_20700 at 4767.216 kb on + strand, within CA264_20700 at 4767.217 kb on - strand, within CA264_20700 at 4767.218 kb on + strand, within CA264_20700 at 4767.222 kb on + strand, within CA264_20700 at 4767.270 kb on + strand at 4767.270 kb on + strand at 4767.270 kb on + strand at 4767.287 kb on - strand at 4767.287 kb on - strand at 4767.347 kb on + strand at 4767.348 kb on - strand at 4767.421 kb on - strand at 4767.439 kb on + strand at 4767.447 kb on + strand at 4767.448 kb on - strand at 4767.460 kb on + strand at 4767.460 kb on + strand at 4767.462 kb on + strand at 4767.463 kb on - strand at 4767.472 kb on + strand at 4767.481 kb on - strand at 4767.631 kb on - strand, within CA264_20705 at 4767.646 kb on + strand, within CA264_20705 at 4767.647 kb on - strand, within CA264_20705 at 4767.658 kb on - strand, within CA264_20705 at 4767.658 kb on - strand, within CA264_20705 at 4767.660 kb on + strand, within CA264_20705 at 4767.666 kb on + strand, within CA264_20705 at 4767.667 kb on - strand, within CA264_20705 at 4767.670 kb on + strand, within CA264_20705 at 4767.702 kb on + strand, within CA264_20705 at 4767.703 kb on - strand, within CA264_20705 at 4767.703 kb on - strand, within CA264_20705 at 4767.745 kb on + strand, within CA264_20705 at 4767.747 kb on + strand, within CA264_20705 at 4767.748 kb on - strand, within CA264_20705 at 4767.748 kb on - strand, within CA264_20705
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml remove 4,763,971 + CA264_20690 0.58 -1.2 4,763,971 + CA264_20690 0.58 +0.2 4,763,972 - CA264_20690 0.58 +0.1 4,764,019 + CA264_20690 0.60 -0.4 4,764,037 + CA264_20690 0.61 -1.2 4,764,038 - CA264_20690 0.61 +2.6 4,764,108 + CA264_20690 0.64 +1.1 4,764,130 + CA264_20690 0.65 -0.3 4,764,131 - CA264_20690 0.65 -0.9 4,764,132 + CA264_20690 0.65 -0.4 4,764,132 + CA264_20690 0.65 +0.7 4,764,155 - CA264_20690 0.66 +0.3 4,764,224 - CA264_20690 0.70 +0.6 4,764,276 + CA264_20690 0.72 +2.0 4,764,277 - CA264_20690 0.72 +0.4 4,764,292 + CA264_20690 0.73 -1.3 4,764,307 + CA264_20690 0.73 -0.9 4,764,308 - CA264_20690 0.73 -0.2 4,764,330 - CA264_20690 0.74 -0.7 4,764,386 - CA264_20690 0.77 +0.3 4,764,497 + CA264_20690 0.82 -1.5 4,764,610 + CA264_20690 0.88 +0.0 4,764,639 + CA264_20690 0.89 -0.9 4,764,669 + +0.5 4,764,669 + +0.8 4,764,670 - +0.3 4,764,670 - -0.4 4,764,696 + -1.3 4,764,697 - +1.1 4,764,697 - +1.1 4,764,840 - -0.1 4,764,848 + -0.2 4,764,848 + -0.4 4,764,849 - +0.0 4,764,849 - +0.0 4,764,849 - -0.2 4,764,850 + +0.1 4,764,854 + +0.8 4,764,855 - -0.1 4,764,855 - +0.3 4,764,891 + -0.4 4,764,923 - +0.5 4,764,923 - -1.0 4,764,934 + -0.6 4,764,960 + +0.6 4,765,093 + -1.2 4,765,093 + -1.3 4,765,093 + -1.0 4,765,094 - -0.2 4,765,094 - -0.3 4,765,094 - -0.0 4,765,146 + CA264_20695 0.11 +0.9 4,765,147 - CA264_20695 0.11 -2.3 4,765,148 + CA264_20695 0.11 -0.5 4,765,148 + CA264_20695 0.11 +1.5 4,765,148 + CA264_20695 0.11 -1.1 4,765,149 - CA264_20695 0.11 -0.6 4,765,194 + CA264_20695 0.13 +0.2 4,765,197 + CA264_20695 0.13 +0.7 4,765,197 + CA264_20695 0.13 -0.2 4,765,198 - CA264_20695 0.13 -0.7 4,765,198 - CA264_20695 0.13 -1.5 4,765,198 - CA264_20695 0.13 +0.7 4,765,227 + CA264_20695 0.15 -0.1 4,765,227 + CA264_20695 0.15 -2.1 4,765,228 - CA264_20695 0.15 -0.4 4,765,291 + CA264_20695 0.18 -0.3 4,765,292 - CA264_20695 0.18 +0.2 4,765,318 - CA264_20695 0.20 -2.0 4,765,318 - CA264_20695 0.20 +0.1 4,765,324 + CA264_20695 0.20 -0.2 4,765,324 + CA264_20695 0.20 -1.0 4,765,398 - CA264_20695 0.24 -1.3 4,765,432 + CA264_20695 0.26 -1.3 4,765,432 + CA264_20695 0.26 -1.4 4,765,434 + CA264_20695 0.26 +0.2 4,765,435 - CA264_20695 0.26 -0.8 4,765,562 - CA264_20695 0.33 +1.6 4,765,577 + CA264_20695 0.34 -0.7 4,765,578 - CA264_20695 0.34 -0.5 4,765,578 - CA264_20695 0.34 +0.1 4,765,665 - CA264_20695 0.39 +0.9 4,765,688 - CA264_20695 0.40 +0.5 4,765,699 + CA264_20695 0.40 -0.3 4,765,699 + CA264_20695 0.40 -0.0 4,765,699 + CA264_20695 0.40 -0.2 4,765,699 + CA264_20695 0.40 +0.2 4,765,700 - CA264_20695 0.41 +0.4 4,765,700 - CA264_20695 0.41 +1.5 4,765,703 + CA264_20695 0.41 -0.2 4,765,704 - CA264_20695 0.41 +0.9 4,765,896 + CA264_20695 0.51 +0.2 4,765,951 + CA264_20695 0.54 +0.0 4,765,952 - CA264_20695 0.54 +0.5 4,765,952 - CA264_20695 0.54 +0.6 4,766,006 + CA264_20695 0.57 +0.0 4,766,006 + CA264_20695 0.57 -0.1 4,766,007 - CA264_20695 0.57 -1.0 4,766,083 - CA264_20695 0.61 +0.7 4,766,086 + CA264_20695 0.61 +0.4 4,766,091 - CA264_20695 0.62 -0.4 4,766,091 - CA264_20695 0.62 -0.1 4,766,108 - CA264_20695 0.63 -0.2 4,766,114 + CA264_20695 0.63 +0.1 4,766,114 + CA264_20695 0.63 -0.6 4,766,167 + CA264_20695 0.66 +0.6 4,766,219 - CA264_20695 0.69 +0.0 4,766,331 - CA264_20695 0.75 +0.8 4,766,370 + CA264_20695 0.77 +0.2 4,766,371 - CA264_20695 0.77 -1.6 4,766,371 - CA264_20695 0.77 +0.1 4,766,373 - CA264_20695 0.77 -0.7 4,766,373 - CA264_20695 0.77 +0.3 4,766,382 + CA264_20695 0.78 -0.7 4,766,408 - CA264_20695 0.79 -1.1 4,766,536 + CA264_20695 0.86 -0.7 4,766,537 - CA264_20695 0.86 -0.2 4,766,537 - CA264_20695 0.86 -0.3 4,766,606 - CA264_20695 0.90 +0.6 4,766,651 - -0.4 4,766,666 + +0.1 4,766,666 + +0.1 4,766,666 + -0.4 4,766,667 - +0.6 4,766,667 - +1.0 4,766,679 + +0.9 4,766,680 - +1.6 4,766,680 - +0.4 4,766,834 + +0.9 4,766,835 - +1.1 4,766,835 - +1.1 4,766,835 - +1.2 4,766,836 + +0.9 4,766,837 - +0.1 4,766,841 + +0.7 4,766,848 + +0.7 4,766,866 - +1.6 4,766,868 - +0.8 4,766,881 + +0.1 4,766,941 + CA264_20700 0.14 -0.2 4,766,942 - CA264_20700 0.14 +2.2 4,766,944 + CA264_20700 0.15 -0.2 4,766,944 + CA264_20700 0.15 +0.2 4,766,945 - CA264_20700 0.15 +0.6 4,766,946 + CA264_20700 0.15 +1.2 4,766,946 + CA264_20700 0.15 +1.1 4,766,947 - CA264_20700 0.16 +0.0 4,767,015 - CA264_20700 0.34 +0.6 4,767,097 + CA264_20700 0.55 +0.5 4,767,098 - CA264_20700 0.55 +1.2 4,767,098 - CA264_20700 0.55 +0.1 4,767,100 - CA264_20700 0.56 +1.9 4,767,109 - CA264_20700 0.58 +0.8 4,767,153 + CA264_20700 0.70 +0.7 4,767,161 - CA264_20700 0.72 +0.5 4,767,210 - CA264_20700 0.85 +0.5 4,767,210 - CA264_20700 0.85 -0.7 4,767,210 - CA264_20700 0.85 +0.7 4,767,210 - CA264_20700 0.85 +2.3 4,767,216 + CA264_20700 0.86 -0.1 4,767,216 + CA264_20700 0.86 +0.7 4,767,217 - CA264_20700 0.87 +0.3 4,767,218 + CA264_20700 0.87 +0.4 4,767,222 + CA264_20700 0.88 +0.5 4,767,270 + -0.4 4,767,270 + +1.5 4,767,270 + +1.1 4,767,287 - -0.0 4,767,287 - +0.3 4,767,347 + -0.1 4,767,348 - +0.4 4,767,421 - +0.9 4,767,439 + +0.8 4,767,447 + +2.4 4,767,448 - +0.5 4,767,460 + +0.9 4,767,460 + +0.2 4,767,462 + +1.5 4,767,463 - +0.4 4,767,472 + +0.7 4,767,481 - +1.9 4,767,631 - CA264_20705 0.18 -1.4 4,767,646 + CA264_20705 0.19 -0.6 4,767,647 - CA264_20705 0.20 +1.2 4,767,658 - CA264_20705 0.20 +0.8 4,767,658 - CA264_20705 0.20 -0.1 4,767,660 + CA264_20705 0.21 +0.3 4,767,666 + CA264_20705 0.21 -1.5 4,767,667 - CA264_20705 0.21 -0.1 4,767,670 + CA264_20705 0.21 +0.9 4,767,702 + CA264_20705 0.24 +0.3 4,767,703 - CA264_20705 0.24 +0.9 4,767,703 - CA264_20705 0.24 +1.0 4,767,745 + CA264_20705 0.27 +0.1 4,767,747 + CA264_20705 0.27 +0.3 4,767,748 - CA264_20705 0.27 +0.4 4,767,748 - CA264_20705 0.27 +0.6
Or see this region's nucleotide sequence