Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18965

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18960 and CA264_18965 are separated by 75 nucleotidesCA264_18965 and CA264_18970 overlap by 44 nucleotidesCA264_18970 and CA264_18975 are separated by 2 nucleotides CA264_18960: CA264_18960 - glucose dehydrogenase, at 4,399,523 to 4,400,980 _18960 CA264_18965: CA264_18965 - hypothetical protein, at 4,401,056 to 4,401,439 _18965 CA264_18970: CA264_18970 - hypothetical protein, at 4,401,396 to 4,401,752 _18970 CA264_18975: CA264_18975 - T9SS C-terminal target domain-containing protein, at 4,401,755 to 4,403,704 _18975 Position (kb) 4401 4402Strain fitness (log2 ratio) -1 0 1 2at 4400.101 kb on - strand, within CA264_18960at 4400.101 kb on - strand, within CA264_18960at 4400.118 kb on + strand, within CA264_18960at 4400.118 kb on + strand, within CA264_18960at 4400.118 kb on + strand, within CA264_18960at 4400.283 kb on + strand, within CA264_18960at 4400.337 kb on + strand, within CA264_18960at 4400.337 kb on + strand, within CA264_18960at 4400.337 kb on + strand, within CA264_18960at 4400.338 kb on - strand, within CA264_18960at 4400.409 kb on + strand, within CA264_18960at 4400.410 kb on - strand, within CA264_18960at 4400.415 kb on + strand, within CA264_18960at 4400.415 kb on + strand, within CA264_18960at 4400.415 kb on + strand, within CA264_18960at 4400.415 kb on + strand, within CA264_18960at 4400.415 kb on + strand, within CA264_18960at 4400.416 kb on - strand, within CA264_18960at 4400.416 kb on - strand, within CA264_18960at 4400.416 kb on - strand, within CA264_18960at 4400.522 kb on - strand, within CA264_18960at 4400.534 kb on + strand, within CA264_18960at 4400.537 kb on + strand, within CA264_18960at 4400.538 kb on - strand, within CA264_18960at 4400.632 kb on + strand, within CA264_18960at 4400.633 kb on - strand, within CA264_18960at 4400.680 kb on - strand, within CA264_18960at 4400.696 kb on + strand, within CA264_18960at 4400.740 kb on - strand, within CA264_18960at 4400.758 kb on - strand, within CA264_18960at 4400.758 kb on - strand, within CA264_18960at 4400.758 kb on - strand, within CA264_18960at 4400.946 kb on - strandat 4400.971 kb on + strandat 4400.980 kb on + strandat 4400.980 kb on + strandat 4400.980 kb on + strandat 4400.981 kb on - strandat 4401.007 kb on + strandat 4401.012 kb on + strandat 4401.012 kb on + strandat 4401.077 kb on + strandat 4401.247 kb on + strand, within CA264_18965at 4401.247 kb on + strand, within CA264_18965at 4401.247 kb on + strand, within CA264_18965at 4401.248 kb on - strand, within CA264_18965at 4401.327 kb on + strand, within CA264_18965at 4401.327 kb on + strand, within CA264_18965at 4401.327 kb on + strand, within CA264_18965at 4401.327 kb on + strand, within CA264_18965at 4401.350 kb on + strand, within CA264_18965at 4401.378 kb on + strand, within CA264_18965at 4401.388 kb on + strand, within CA264_18965at 4401.389 kb on - strand, within CA264_18965at 4401.395 kb on + strand, within CA264_18965at 4401.404 kb on + strandat 4401.404 kb on + strandat 4401.405 kb on - strandat 4401.406 kb on + strandat 4401.407 kb on - strandat 4401.407 kb on - strandat 4401.621 kb on + strand, within CA264_18970at 4401.622 kb on - strand, within CA264_18970at 4401.622 kb on - strand, within CA264_18970at 4401.654 kb on - strand, within CA264_18970at 4401.691 kb on - strand, within CA264_18970at 4401.696 kb on + strand, within CA264_18970at 4401.748 kb on - strandat 4401.751 kb on - strandat 4401.790 kb on - strandat 4401.790 kb on - strandat 4401.880 kb on + strandat 4401.881 kb on - strandat 4401.883 kb on - strandat 4401.913 kb on - strandat 4401.916 kb on + strandat 4401.917 kb on - strandat 4402.142 kb on + strand, within CA264_18975at 4402.143 kb on - strand, within CA264_18975at 4402.145 kb on - strand, within CA264_18975at 4402.238 kb on + strand, within CA264_18975at 4402.271 kb on - strand, within CA264_18975at 4402.272 kb on + strand, within CA264_18975at 4402.272 kb on + strand, within CA264_18975at 4402.297 kb on - strand, within CA264_18975at 4402.433 kb on - strand, within CA264_18975

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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4,400,101 - CA264_18960 0.40 -0.4
4,400,101 - CA264_18960 0.40 +0.1
4,400,118 + CA264_18960 0.41 -0.3
4,400,118 + CA264_18960 0.41 +0.3
4,400,118 + CA264_18960 0.41 -1.1
4,400,283 + CA264_18960 0.52 -0.5
4,400,337 + CA264_18960 0.56 -0.1
4,400,337 + CA264_18960 0.56 -0.0
4,400,337 + CA264_18960 0.56 +0.8
4,400,338 - CA264_18960 0.56 +0.7
4,400,409 + CA264_18960 0.61 -0.6
4,400,410 - CA264_18960 0.61 +0.0
4,400,415 + CA264_18960 0.61 +0.9
4,400,415 + CA264_18960 0.61 -0.7
4,400,415 + CA264_18960 0.61 +0.2
4,400,415 + CA264_18960 0.61 -0.3
4,400,415 + CA264_18960 0.61 +0.4
4,400,416 - CA264_18960 0.61 +0.3
4,400,416 - CA264_18960 0.61 -0.8
4,400,416 - CA264_18960 0.61 +0.4
4,400,522 - CA264_18960 0.69 -0.6
4,400,534 + CA264_18960 0.69 -0.1
4,400,537 + CA264_18960 0.70 +1.1
4,400,538 - CA264_18960 0.70 -0.1
4,400,632 + CA264_18960 0.76 +0.4
4,400,633 - CA264_18960 0.76 +0.1
4,400,680 - CA264_18960 0.79 -1.1
4,400,696 + CA264_18960 0.80 +0.4
4,400,740 - CA264_18960 0.83 +0.1
4,400,758 - CA264_18960 0.85 +0.3
4,400,758 - CA264_18960 0.85 -0.1
4,400,758 - CA264_18960 0.85 -0.3
4,400,946 - +0.6
4,400,971 + +0.4
4,400,980 + +0.2
4,400,980 + -0.3
4,400,980 + +0.2
4,400,981 - +0.2
4,401,007 + +0.4
4,401,012 + +0.5
4,401,012 + +0.1
4,401,077 + +0.2
4,401,247 + CA264_18965 0.50 +0.6
4,401,247 + CA264_18965 0.50 -0.9
4,401,247 + CA264_18965 0.50 -0.5
4,401,248 - CA264_18965 0.50 +0.2
4,401,327 + CA264_18965 0.71 +0.4
4,401,327 + CA264_18965 0.71 -0.1
4,401,327 + CA264_18965 0.71 +0.3
4,401,327 + CA264_18965 0.71 -0.3
4,401,350 + CA264_18965 0.77 -0.1
4,401,378 + CA264_18965 0.84 +0.1
4,401,388 + CA264_18965 0.86 +0.0
4,401,389 - CA264_18965 0.87 +1.4
4,401,395 + CA264_18965 0.88 +0.5
4,401,404 + +0.2
4,401,404 + +0.9
4,401,405 - -0.5
4,401,406 + +0.8
4,401,407 - -0.5
4,401,407 - +0.1
4,401,621 + CA264_18970 0.63 -1.1
4,401,622 - CA264_18970 0.63 -0.9
4,401,622 - CA264_18970 0.63 +0.4
4,401,654 - CA264_18970 0.72 -1.0
4,401,691 - CA264_18970 0.83 -0.0
4,401,696 + CA264_18970 0.84 +1.4
4,401,748 - -0.3
4,401,751 - +0.4
4,401,790 - +0.1
4,401,790 - +0.2
4,401,880 + -0.1
4,401,881 - +0.2
4,401,883 - -0.3
4,401,913 - -0.2
4,401,916 + +0.5
4,401,917 - +2.2
4,402,142 + CA264_18975 0.20 +0.6
4,402,143 - CA264_18975 0.20 +0.2
4,402,145 - CA264_18975 0.20 +1.4
4,402,238 + CA264_18975 0.25 +0.4
4,402,271 - CA264_18975 0.26 +1.2
4,402,272 + CA264_18975 0.27 +0.4
4,402,272 + CA264_18975 0.27 -0.1
4,402,297 - CA264_18975 0.28 -0.3
4,402,433 - CA264_18975 0.35 +0.1

Or see this region's nucleotide sequence