Experiment: m.b. D-Cycloserine 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_18855 and CA264_18860 are separated by 132 nucleotides CA264_18860 and CA264_18865 are separated by 96 nucleotides
CA264_18855: CA264_18855 - chromosome segregation protein ScpA, at 4,376,620 to 4,377,366
_18855
CA264_18860: CA264_18860 - TIGR00374 family protein, at 4,377,499 to 4,378,560
_18860
CA264_18865: CA264_18865 - monooxygenase, at 4,378,657 to 4,379,799
_18865
Position (kb)
4377
4378
4379 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4376.578 kb on + strand at 4376.580 kb on + strand at 4376.592 kb on + strand at 4376.770 kb on - strand, within CA264_18855 at 4376.775 kb on + strand, within CA264_18855 at 4376.899 kb on + strand, within CA264_18855 at 4376.970 kb on - strand, within CA264_18855 at 4377.046 kb on - strand, within CA264_18855 at 4377.119 kb on - strand, within CA264_18855 at 4377.365 kb on - strand at 4377.418 kb on - strand at 4377.421 kb on + strand at 4377.425 kb on - strand at 4377.465 kb on - strand at 4377.496 kb on + strand at 4377.496 kb on + strand at 4377.497 kb on - strand at 4377.497 kb on - strand at 4377.497 kb on - strand at 4377.497 kb on - strand at 4377.573 kb on - strand at 4377.611 kb on + strand, within CA264_18860 at 4377.694 kb on + strand, within CA264_18860 at 4377.694 kb on + strand, within CA264_18860 at 4377.694 kb on + strand, within CA264_18860 at 4377.695 kb on - strand at 4377.696 kb on + strand, within CA264_18860 at 4377.696 kb on + strand, within CA264_18860 at 4377.697 kb on - strand, within CA264_18860 at 4377.868 kb on + strand, within CA264_18860 at 4377.869 kb on - strand, within CA264_18860 at 4377.869 kb on - strand, within CA264_18860 at 4377.869 kb on - strand, within CA264_18860 at 4377.906 kb on + strand, within CA264_18860 at 4377.906 kb on + strand, within CA264_18860 at 4378.007 kb on - strand, within CA264_18860 at 4378.011 kb on + strand, within CA264_18860 at 4378.012 kb on - strand, within CA264_18860 at 4378.012 kb on - strand, within CA264_18860 at 4378.016 kb on - strand, within CA264_18860 at 4378.016 kb on - strand, within CA264_18860 at 4378.016 kb on - strand, within CA264_18860 at 4378.026 kb on + strand, within CA264_18860 at 4378.026 kb on + strand, within CA264_18860 at 4378.027 kb on - strand, within CA264_18860 at 4378.027 kb on - strand, within CA264_18860 at 4378.027 kb on - strand, within CA264_18860 at 4378.033 kb on + strand, within CA264_18860 at 4378.035 kb on + strand, within CA264_18860 at 4378.035 kb on + strand, within CA264_18860 at 4378.035 kb on + strand, within CA264_18860 at 4378.036 kb on - strand, within CA264_18860 at 4378.051 kb on + strand, within CA264_18860 at 4378.052 kb on - strand, within CA264_18860 at 4378.052 kb on - strand, within CA264_18860 at 4378.052 kb on - strand, within CA264_18860 at 4378.052 kb on - strand, within CA264_18860 at 4378.052 kb on - strand, within CA264_18860 at 4378.052 kb on - strand, within CA264_18860 at 4378.052 kb on - strand, within CA264_18860 at 4378.197 kb on + strand, within CA264_18860 at 4378.198 kb on - strand, within CA264_18860 at 4378.198 kb on - strand, within CA264_18860 at 4378.202 kb on - strand, within CA264_18860 at 4378.249 kb on + strand, within CA264_18860 at 4378.465 kb on + strand at 4378.468 kb on + strand at 4378.521 kb on - strand at 4378.559 kb on - strand at 4378.654 kb on + strand at 4378.655 kb on - strand at 4378.671 kb on - strand at 4378.673 kb on + strand at 4378.721 kb on + strand at 4378.740 kb on - strand at 4378.741 kb on + strand at 4378.741 kb on + strand at 4378.800 kb on + strand, within CA264_18865 at 4378.800 kb on + strand, within CA264_18865 at 4378.801 kb on - strand, within CA264_18865 at 4378.801 kb on - strand, within CA264_18865 at 4378.874 kb on + strand, within CA264_18865 at 4378.934 kb on - strand, within CA264_18865 at 4378.934 kb on - strand, within CA264_18865 at 4378.979 kb on + strand, within CA264_18865 at 4379.016 kb on - strand, within CA264_18865 at 4379.016 kb on - strand, within CA264_18865 at 4379.026 kb on - strand, within CA264_18865 at 4379.122 kb on - strand, within CA264_18865 at 4379.133 kb on - strand, within CA264_18865 at 4379.213 kb on + strand, within CA264_18865 at 4379.214 kb on - strand, within CA264_18865 at 4379.214 kb on - strand, within CA264_18865 at 4379.219 kb on + strand, within CA264_18865 at 4379.220 kb on - strand, within CA264_18865 at 4379.456 kb on + strand, within CA264_18865 at 4379.456 kb on + strand, within CA264_18865 at 4379.526 kb on + strand, within CA264_18865 at 4379.527 kb on - strand, within CA264_18865
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml remove 4,376,578 + +0.9 4,376,580 + -0.1 4,376,592 + -1.0 4,376,770 - CA264_18855 0.20 -1.7 4,376,775 + CA264_18855 0.21 -2.2 4,376,899 + CA264_18855 0.37 -0.6 4,376,970 - CA264_18855 0.47 -0.5 4,377,046 - CA264_18855 0.57 +0.4 4,377,119 - CA264_18855 0.67 -2.1 4,377,365 - -0.4 4,377,418 - -1.3 4,377,421 + +1.5 4,377,425 - -0.1 4,377,465 - -0.4 4,377,496 + +0.1 4,377,496 + -0.2 4,377,497 - -1.8 4,377,497 - +2.7 4,377,497 - +1.6 4,377,497 - -0.4 4,377,573 - +0.2 4,377,611 + CA264_18860 0.11 +1.3 4,377,694 + CA264_18860 0.18 +0.5 4,377,694 + CA264_18860 0.18 -0.1 4,377,694 + CA264_18860 0.18 -0.2 4,377,695 - +0.7 4,377,696 + CA264_18860 0.19 -1.1 4,377,696 + CA264_18860 0.19 +0.5 4,377,697 - CA264_18860 0.19 +0.2 4,377,868 + CA264_18860 0.35 -0.1 4,377,869 - CA264_18860 0.35 +1.3 4,377,869 - CA264_18860 0.35 +0.7 4,377,869 - CA264_18860 0.35 +1.7 4,377,906 + CA264_18860 0.38 +0.7 4,377,906 + CA264_18860 0.38 +0.4 4,378,007 - CA264_18860 0.48 +0.2 4,378,011 + CA264_18860 0.48 -0.5 4,378,012 - CA264_18860 0.48 +1.8 4,378,012 - CA264_18860 0.48 -0.2 4,378,016 - CA264_18860 0.49 +0.8 4,378,016 - CA264_18860 0.49 -0.3 4,378,016 - CA264_18860 0.49 +1.3 4,378,026 + CA264_18860 0.50 +1.1 4,378,026 + CA264_18860 0.50 +1.1 4,378,027 - CA264_18860 0.50 -0.6 4,378,027 - CA264_18860 0.50 +1.1 4,378,027 - CA264_18860 0.50 +0.6 4,378,033 + CA264_18860 0.50 +0.0 4,378,035 + CA264_18860 0.50 -0.4 4,378,035 + CA264_18860 0.50 +0.2 4,378,035 + CA264_18860 0.50 +0.3 4,378,036 - CA264_18860 0.51 +1.5 4,378,051 + CA264_18860 0.52 -0.2 4,378,052 - CA264_18860 0.52 -0.6 4,378,052 - CA264_18860 0.52 -0.1 4,378,052 - CA264_18860 0.52 +1.1 4,378,052 - CA264_18860 0.52 +0.3 4,378,052 - CA264_18860 0.52 +0.7 4,378,052 - CA264_18860 0.52 -0.1 4,378,052 - CA264_18860 0.52 +1.1 4,378,197 + CA264_18860 0.66 -0.7 4,378,198 - CA264_18860 0.66 +0.5 4,378,198 - CA264_18860 0.66 -1.0 4,378,202 - CA264_18860 0.66 +0.7 4,378,249 + CA264_18860 0.71 -0.0 4,378,465 + -2.1 4,378,468 + -0.0 4,378,521 - +0.1 4,378,559 - +1.2 4,378,654 + +0.3 4,378,655 - -1.6 4,378,671 - +1.2 4,378,673 + +1.3 4,378,721 + -0.6 4,378,740 - -0.0 4,378,741 + -1.1 4,378,741 + +0.1 4,378,800 + CA264_18865 0.13 +0.8 4,378,800 + CA264_18865 0.13 -2.1 4,378,801 - CA264_18865 0.13 +1.3 4,378,801 - CA264_18865 0.13 -0.5 4,378,874 + CA264_18865 0.19 -0.3 4,378,934 - CA264_18865 0.24 +0.6 4,378,934 - CA264_18865 0.24 -0.1 4,378,979 + CA264_18865 0.28 +0.8 4,379,016 - CA264_18865 0.31 +0.3 4,379,016 - CA264_18865 0.31 +0.5 4,379,026 - CA264_18865 0.32 -1.4 4,379,122 - CA264_18865 0.41 +1.8 4,379,133 - CA264_18865 0.42 +0.3 4,379,213 + CA264_18865 0.49 -0.0 4,379,214 - CA264_18865 0.49 +0.0 4,379,214 - CA264_18865 0.49 +0.8 4,379,219 + CA264_18865 0.49 +0.5 4,379,220 - CA264_18865 0.49 -0.6 4,379,456 + CA264_18865 0.70 -0.7 4,379,456 + CA264_18865 0.70 +0.2 4,379,526 + CA264_18865 0.76 +0.4 4,379,527 - CA264_18865 0.76 -0.1
Or see this region's nucleotide sequence