Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18790

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18780 and CA264_18785 are separated by 33 nucleotidesCA264_18785 and CA264_18790 are separated by 159 nucleotidesCA264_18790 and CA264_18795 are separated by 82 nucleotides CA264_18780: CA264_18780 - hypothetical protein, at 4,361,143 to 4,362,252 _18780 CA264_18785: CA264_18785 - hypothetical protein, at 4,362,286 to 4,362,609 _18785 CA264_18790: CA264_18790 - thymidine kinase, at 4,362,769 to 4,363,365 _18790 CA264_18795: CA264_18795 - hypothetical protein, at 4,363,448 to 4,365,772 _18795 Position (kb) 4362 4363 4364Strain fitness (log2 ratio) -2 -1 0 1at 4361.825 kb on + strand, within CA264_18780at 4361.826 kb on - strand, within CA264_18780at 4362.101 kb on - strand, within CA264_18780at 4362.238 kb on - strandat 4362.240 kb on - strandat 4362.240 kb on - strandat 4362.272 kb on - strandat 4362.539 kb on + strand, within CA264_18785at 4362.608 kb on - strandat 4362.625 kb on + strandat 4362.718 kb on + strandat 4362.724 kb on + strandat 4362.725 kb on - strandat 4362.740 kb on + strandat 4362.740 kb on + strandat 4362.741 kb on - strandat 4362.741 kb on - strandat 4362.743 kb on - strandat 4362.744 kb on + strandat 4362.749 kb on - strandat 4362.752 kb on + strandat 4362.932 kb on + strand, within CA264_18790at 4362.963 kb on - strand, within CA264_18790at 4362.963 kb on - strand, within CA264_18790at 4362.969 kb on + strand, within CA264_18790at 4362.970 kb on - strand, within CA264_18790at 4362.970 kb on - strand, within CA264_18790at 4362.996 kb on + strand, within CA264_18790at 4362.996 kb on + strand, within CA264_18790at 4362.998 kb on + strand, within CA264_18790at 4362.999 kb on - strand, within CA264_18790at 4362.999 kb on - strand, within CA264_18790at 4363.043 kb on + strand, within CA264_18790at 4363.044 kb on - strand, within CA264_18790at 4363.046 kb on + strand, within CA264_18790at 4363.047 kb on - strand, within CA264_18790at 4363.047 kb on - strand, within CA264_18790at 4363.047 kb on - strand, within CA264_18790at 4363.201 kb on + strand, within CA264_18790at 4363.201 kb on + strand, within CA264_18790at 4363.230 kb on - strand, within CA264_18790at 4363.252 kb on + strand, within CA264_18790at 4363.253 kb on - strand, within CA264_18790at 4363.293 kb on - strand, within CA264_18790at 4363.310 kb on - strandat 4363.336 kb on - strandat 4363.404 kb on - strandat 4363.422 kb on + strandat 4363.422 kb on + strandat 4363.423 kb on - strandat 4363.423 kb on - strandat 4363.458 kb on + strandat 4363.458 kb on + strandat 4363.458 kb on + strandat 4363.459 kb on - strandat 4363.459 kb on - strandat 4363.628 kb on + strandat 4363.629 kb on - strandat 4363.730 kb on - strand, within CA264_18795at 4363.761 kb on + strand, within CA264_18795at 4363.762 kb on - strand, within CA264_18795at 4363.769 kb on + strand, within CA264_18795at 4363.769 kb on + strand, within CA264_18795at 4363.770 kb on - strand, within CA264_18795at 4363.770 kb on - strand, within CA264_18795at 4363.812 kb on - strand, within CA264_18795at 4363.871 kb on + strand, within CA264_18795at 4363.872 kb on - strand, within CA264_18795at 4363.955 kb on + strand, within CA264_18795at 4363.955 kb on + strand, within CA264_18795at 4364.007 kb on + strand, within CA264_18795at 4364.008 kb on - strand, within CA264_18795at 4364.039 kb on + strand, within CA264_18795at 4364.039 kb on + strand, within CA264_18795at 4364.129 kb on - strand, within CA264_18795at 4364.136 kb on + strand, within CA264_18795at 4364.165 kb on + strand, within CA264_18795at 4364.274 kb on + strand, within CA264_18795at 4364.298 kb on + strand, within CA264_18795at 4364.299 kb on - strand, within CA264_18795

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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4,361,825 + CA264_18780 0.61 -0.5
4,361,826 - CA264_18780 0.62 -0.2
4,362,101 - CA264_18780 0.86 -0.6
4,362,238 - +0.2
4,362,240 - -1.6
4,362,240 - -1.6
4,362,272 - +1.7
4,362,539 + CA264_18785 0.78 -0.7
4,362,608 - -0.0
4,362,625 + -1.8
4,362,718 + -1.8
4,362,724 + -1.2
4,362,725 - +0.0
4,362,740 + -1.6
4,362,740 + -0.3
4,362,741 - +0.4
4,362,741 - -0.1
4,362,743 - +0.1
4,362,744 + +0.4
4,362,749 - +0.3
4,362,752 + -0.7
4,362,932 + CA264_18790 0.27 +0.1
4,362,963 - CA264_18790 0.32 -0.4
4,362,963 - CA264_18790 0.32 +1.5
4,362,969 + CA264_18790 0.34 -1.5
4,362,970 - CA264_18790 0.34 -1.0
4,362,970 - CA264_18790 0.34 -0.9
4,362,996 + CA264_18790 0.38 -0.4
4,362,996 + CA264_18790 0.38 -0.6
4,362,998 + CA264_18790 0.38 -0.5
4,362,999 - CA264_18790 0.39 +0.1
4,362,999 - CA264_18790 0.39 -0.7
4,363,043 + CA264_18790 0.46 -0.2
4,363,044 - CA264_18790 0.46 -0.3
4,363,046 + CA264_18790 0.46 +0.2
4,363,047 - CA264_18790 0.47 +0.4
4,363,047 - CA264_18790 0.47 -0.3
4,363,047 - CA264_18790 0.47 -1.4
4,363,201 + CA264_18790 0.72 -0.6
4,363,201 + CA264_18790 0.72 -0.5
4,363,230 - CA264_18790 0.77 -1.3
4,363,252 + CA264_18790 0.81 -1.0
4,363,253 - CA264_18790 0.81 +1.1
4,363,293 - CA264_18790 0.88 +0.5
4,363,310 - +0.1
4,363,336 - -0.3
4,363,404 - -0.8
4,363,422 + -0.1
4,363,422 + +0.6
4,363,423 - -1.3
4,363,423 - +0.0
4,363,458 + +0.0
4,363,458 + -0.9
4,363,458 + -0.4
4,363,459 - -1.7
4,363,459 - -0.5
4,363,628 + +0.1
4,363,629 - -1.2
4,363,730 - CA264_18795 0.12 +0.6
4,363,761 + CA264_18795 0.13 +0.2
4,363,762 - CA264_18795 0.14 +0.2
4,363,769 + CA264_18795 0.14 -0.1
4,363,769 + CA264_18795 0.14 -0.3
4,363,770 - CA264_18795 0.14 +1.1
4,363,770 - CA264_18795 0.14 +0.3
4,363,812 - CA264_18795 0.16 +0.0
4,363,871 + CA264_18795 0.18 -0.5
4,363,872 - CA264_18795 0.18 -0.1
4,363,955 + CA264_18795 0.22 +0.4
4,363,955 + CA264_18795 0.22 -2.0
4,364,007 + CA264_18795 0.24 -0.1
4,364,008 - CA264_18795 0.24 -0.3
4,364,039 + CA264_18795 0.25 -0.8
4,364,039 + CA264_18795 0.25 +0.8
4,364,129 - CA264_18795 0.29 -1.0
4,364,136 + CA264_18795 0.30 -0.5
4,364,165 + CA264_18795 0.31 -0.1
4,364,274 + CA264_18795 0.36 -0.2
4,364,298 + CA264_18795 0.37 +0.7
4,364,299 - CA264_18795 0.37 -0.5

Or see this region's nucleotide sequence