Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18120

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18115 and CA264_18120 are separated by 143 nucleotidesCA264_18120 and CA264_18125 are separated by 201 nucleotides CA264_18115: CA264_18115 - Rossman fold protein, TIGR00730 family, at 4,212,495 to 4,213,358 _18115 CA264_18120: CA264_18120 - ABC transporter, at 4,213,502 to 4,214,749 _18120 CA264_18125: CA264_18125 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 4,214,951 to 4,215,997 _18125 Position (kb) 4213 4214 4215Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4213.434 kb on - strandat 4213.493 kb on + strandat 4213.493 kb on + strandat 4213.494 kb on - strandat 4213.494 kb on - strandat 4213.494 kb on - strandat 4213.497 kb on + strandat 4213.497 kb on + strandat 4213.497 kb on + strandat 4213.497 kb on + strandat 4213.498 kb on - strandat 4213.498 kb on - strandat 4213.499 kb on + strandat 4213.499 kb on + strandat 4213.499 kb on + strandat 4213.503 kb on + strandat 4213.504 kb on - strandat 4213.532 kb on + strandat 4213.556 kb on + strandat 4213.556 kb on + strandat 4213.556 kb on + strandat 4213.577 kb on + strandat 4213.604 kb on + strandat 4213.605 kb on - strandat 4213.605 kb on - strandat 4213.605 kb on - strandat 4213.607 kb on - strandat 4213.607 kb on - strandat 4213.738 kb on + strand, within CA264_18120at 4213.739 kb on - strand, within CA264_18120at 4213.842 kb on - strand, within CA264_18120at 4213.842 kb on - strand, within CA264_18120at 4213.910 kb on + strand, within CA264_18120at 4213.910 kb on + strand, within CA264_18120at 4213.911 kb on - strand, within CA264_18120at 4213.967 kb on + strand, within CA264_18120at 4213.968 kb on - strand, within CA264_18120at 4214.036 kb on + strand, within CA264_18120at 4214.045 kb on - strand, within CA264_18120at 4214.069 kb on + strand, within CA264_18120at 4214.070 kb on - strand, within CA264_18120at 4214.159 kb on + strand, within CA264_18120at 4214.159 kb on + strand, within CA264_18120at 4214.169 kb on - strand, within CA264_18120at 4214.169 kb on - strand, within CA264_18120at 4214.169 kb on - strand, within CA264_18120at 4214.347 kb on - strand, within CA264_18120at 4214.395 kb on + strand, within CA264_18120at 4214.446 kb on + strand, within CA264_18120at 4214.447 kb on - strand, within CA264_18120at 4214.502 kb on + strand, within CA264_18120at 4214.503 kb on - strand, within CA264_18120at 4214.503 kb on - strand, within CA264_18120at 4214.503 kb on - strand, within CA264_18120at 4214.518 kb on - strand, within CA264_18120at 4214.553 kb on + strand, within CA264_18120at 4214.553 kb on + strand, within CA264_18120at 4214.553 kb on + strand, within CA264_18120at 4214.554 kb on - strand, within CA264_18120at 4214.554 kb on - strand, within CA264_18120at 4214.558 kb on - strand, within CA264_18120at 4214.612 kb on + strand, within CA264_18120at 4214.653 kb on + strandat 4214.742 kb on + strandat 4214.742 kb on + strandat 4214.743 kb on - strandat 4214.744 kb on + strandat 4214.744 kb on + strandat 4214.744 kb on + strandat 4214.745 kb on - strandat 4214.745 kb on - strandat 4214.745 kb on - strandat 4214.745 kb on - strandat 4214.749 kb on - strandat 4214.773 kb on + strandat 4214.773 kb on + strandat 4214.779 kb on - strandat 4214.795 kb on + strandat 4214.801 kb on + strandat 4214.807 kb on + strandat 4214.854 kb on - strandat 4214.867 kb on + strandat 4214.911 kb on - strandat 4214.918 kb on - strandat 4214.933 kb on + strandat 4214.941 kb on + strandat 4214.951 kb on - strandat 4214.951 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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4,213,434 - -0.3
4,213,493 + +0.9
4,213,493 + -0.4
4,213,494 - +1.0
4,213,494 - -0.5
4,213,494 - +0.3
4,213,497 + -0.0
4,213,497 + +0.3
4,213,497 + -0.3
4,213,497 + +0.4
4,213,498 - +0.2
4,213,498 - +0.1
4,213,499 + -0.2
4,213,499 + -0.2
4,213,499 + -0.3
4,213,503 + +1.2
4,213,504 - +0.3
4,213,532 + +0.2
4,213,556 + -0.9
4,213,556 + +0.0
4,213,556 + +0.3
4,213,577 + -0.6
4,213,604 + +0.5
4,213,605 - +0.1
4,213,605 - -1.7
4,213,605 - -0.2
4,213,607 - +1.1
4,213,607 - +0.6
4,213,738 + CA264_18120 0.19 -1.7
4,213,739 - CA264_18120 0.19 +0.3
4,213,842 - CA264_18120 0.27 +1.3
4,213,842 - CA264_18120 0.27 -0.5
4,213,910 + CA264_18120 0.33 +0.1
4,213,910 + CA264_18120 0.33 +0.1
4,213,911 - CA264_18120 0.33 +0.6
4,213,967 + CA264_18120 0.37 -0.4
4,213,968 - CA264_18120 0.37 -1.5
4,214,036 + CA264_18120 0.43 +0.5
4,214,045 - CA264_18120 0.44 -0.8
4,214,069 + CA264_18120 0.45 +0.5
4,214,070 - CA264_18120 0.46 -0.6
4,214,159 + CA264_18120 0.53 -1.6
4,214,159 + CA264_18120 0.53 -0.2
4,214,169 - CA264_18120 0.53 -0.1
4,214,169 - CA264_18120 0.53 -0.2
4,214,169 - CA264_18120 0.53 +2.9
4,214,347 - CA264_18120 0.68 -0.2
4,214,395 + CA264_18120 0.72 +0.2
4,214,446 + CA264_18120 0.76 +1.1
4,214,447 - CA264_18120 0.76 +0.0
4,214,502 + CA264_18120 0.80 +0.3
4,214,503 - CA264_18120 0.80 +0.1
4,214,503 - CA264_18120 0.80 +0.8
4,214,503 - CA264_18120 0.80 -0.1
4,214,518 - CA264_18120 0.81 -0.1
4,214,553 + CA264_18120 0.84 +0.4
4,214,553 + CA264_18120 0.84 +2.4
4,214,553 + CA264_18120 0.84 +0.3
4,214,554 - CA264_18120 0.84 -1.4
4,214,554 - CA264_18120 0.84 -0.5
4,214,558 - CA264_18120 0.85 -0.4
4,214,612 + CA264_18120 0.89 +0.2
4,214,653 + +0.3
4,214,742 + -2.2
4,214,742 + +0.3
4,214,743 - +0.6
4,214,744 + -0.2
4,214,744 + -0.0
4,214,744 + +0.8
4,214,745 - -0.0
4,214,745 - -0.2
4,214,745 - -1.1
4,214,745 - +0.4
4,214,749 - -0.6
4,214,773 + -0.5
4,214,773 + -0.1
4,214,779 - +0.3
4,214,795 + -0.2
4,214,801 + -0.7
4,214,807 + -0.1
4,214,854 - -0.0
4,214,867 + -1.7
4,214,911 - +0.8
4,214,918 - +1.0
4,214,933 + -0.3
4,214,941 + +0.2
4,214,951 - +0.0
4,214,951 - -1.5

Or see this region's nucleotide sequence