Experiment: m.b. D-Cycloserine 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_17560 and CA264_17565 are separated by 161 nucleotides CA264_17565 and CA264_17570 are separated by 65 nucleotides CA264_17570 and CA264_17575 are separated by 124 nucleotides CA264_17575 and CA264_17580 are separated by 131 nucleotides
CA264_17560: CA264_17560 - hypothetical protein, at 4,092,193 to 4,093,677
_17560
CA264_17565: CA264_17565 - hypothetical protein, at 4,093,839 to 4,094,039
_17565
CA264_17570: CA264_17570 - TIGR00266 family protein, at 4,094,105 to 4,094,872
_17570
CA264_17575: CA264_17575 - hypothetical protein, at 4,094,997 to 4,095,359
_17575
CA264_17580: CA264_17580 - glutamate--tRNA ligase, at 4,095,491 to 4,097,032
_17580
Position (kb)
4094
4095 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 4093.121 kb on + strand, within CA264_17560 at 4093.122 kb on - strand, within CA264_17560 at 4093.136 kb on + strand, within CA264_17560 at 4093.137 kb on - strand, within CA264_17560 at 4093.153 kb on + strand, within CA264_17560 at 4093.154 kb on - strand, within CA264_17560 at 4093.192 kb on + strand, within CA264_17560 at 4093.193 kb on - strand, within CA264_17560 at 4093.195 kb on - strand, within CA264_17560 at 4093.271 kb on + strand, within CA264_17560 at 4093.272 kb on - strand, within CA264_17560 at 4093.272 kb on - strand, within CA264_17560 at 4093.333 kb on + strand, within CA264_17560 at 4093.334 kb on - strand, within CA264_17560 at 4093.487 kb on + strand, within CA264_17560 at 4093.488 kb on - strand, within CA264_17560 at 4093.498 kb on + strand, within CA264_17560 at 4093.588 kb on - strand at 4093.642 kb on + strand at 4093.675 kb on + strand at 4093.675 kb on + strand at 4093.675 kb on + strand at 4093.732 kb on + strand at 4093.732 kb on + strand at 4093.733 kb on - strand at 4093.733 kb on - strand at 4093.733 kb on - strand at 4093.734 kb on + strand at 4093.734 kb on + strand at 4093.735 kb on - strand at 4093.764 kb on - strand at 4093.803 kb on - strand at 4093.840 kb on + strand at 4093.840 kb on + strand at 4093.840 kb on + strand at 4093.887 kb on + strand, within CA264_17565 at 4093.887 kb on + strand, within CA264_17565 at 4093.943 kb on + strand, within CA264_17565 at 4094.032 kb on - strand at 4094.050 kb on + strand at 4094.064 kb on + strand at 4094.065 kb on - strand at 4094.065 kb on - strand at 4094.126 kb on - strand at 4094.126 kb on - strand at 4094.269 kb on + strand, within CA264_17570 at 4094.269 kb on + strand, within CA264_17570 at 4094.289 kb on - strand, within CA264_17570 at 4094.426 kb on + strand, within CA264_17570 at 4094.428 kb on + strand, within CA264_17570 at 4094.428 kb on + strand, within CA264_17570 at 4094.641 kb on + strand, within CA264_17570 at 4094.760 kb on + strand, within CA264_17570 at 4094.760 kb on + strand, within CA264_17570 at 4094.848 kb on - strand at 4094.852 kb on + strand at 4094.879 kb on - strand at 4094.879 kb on - strand at 4094.879 kb on - strand at 4094.887 kb on + strand at 4094.888 kb on - strand at 4094.888 kb on - strand at 4094.895 kb on + strand at 4094.944 kb on + strand at 4094.972 kb on - strand at 4094.979 kb on - strand at 4094.979 kb on - strand at 4094.999 kb on - strand at 4095.135 kb on + strand, within CA264_17575 at 4095.136 kb on - strand, within CA264_17575 at 4095.142 kb on + strand, within CA264_17575 at 4095.143 kb on - strand, within CA264_17575 at 4095.143 kb on - strand, within CA264_17575 at 4095.193 kb on - strand, within CA264_17575 at 4095.201 kb on - strand, within CA264_17575 at 4095.240 kb on + strand, within CA264_17575 at 4095.240 kb on + strand, within CA264_17575 at 4095.241 kb on - strand, within CA264_17575 at 4095.378 kb on - strand at 4095.380 kb on - strand at 4095.383 kb on + strand at 4095.384 kb on - strand at 4095.390 kb on - strand at 4095.521 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml remove 4,093,121 + CA264_17560 0.62 -0.4 4,093,122 - CA264_17560 0.63 -1.3 4,093,136 + CA264_17560 0.64 +0.5 4,093,137 - CA264_17560 0.64 -0.8 4,093,153 + CA264_17560 0.65 -0.5 4,093,154 - CA264_17560 0.65 -0.4 4,093,192 + CA264_17560 0.67 -0.7 4,093,193 - CA264_17560 0.67 -0.4 4,093,195 - CA264_17560 0.67 +0.6 4,093,271 + CA264_17560 0.73 +0.4 4,093,272 - CA264_17560 0.73 -0.7 4,093,272 - CA264_17560 0.73 -0.6 4,093,333 + CA264_17560 0.77 +1.1 4,093,334 - CA264_17560 0.77 +0.4 4,093,487 + CA264_17560 0.87 -0.9 4,093,488 - CA264_17560 0.87 +0.5 4,093,498 + CA264_17560 0.88 -0.3 4,093,588 - +1.5 4,093,642 + +0.6 4,093,675 + +1.9 4,093,675 + -0.4 4,093,675 + +0.1 4,093,732 + +0.4 4,093,732 + +0.2 4,093,733 - -0.8 4,093,733 - -1.5 4,093,733 - +0.6 4,093,734 + -0.4 4,093,734 + -0.5 4,093,735 - -0.2 4,093,764 - +1.2 4,093,803 - -1.0 4,093,840 + -0.9 4,093,840 + -0.7 4,093,840 + -0.2 4,093,887 + CA264_17565 0.24 -0.0 4,093,887 + CA264_17565 0.24 +0.5 4,093,943 + CA264_17565 0.52 +0.2 4,094,032 - +0.2 4,094,050 + -0.5 4,094,064 + -0.0 4,094,065 - -0.0 4,094,065 - -0.8 4,094,126 - -0.8 4,094,126 - +0.2 4,094,269 + CA264_17570 0.21 +0.1 4,094,269 + CA264_17570 0.21 -0.3 4,094,289 - CA264_17570 0.24 +0.4 4,094,426 + CA264_17570 0.42 -0.5 4,094,428 + CA264_17570 0.42 -0.4 4,094,428 + CA264_17570 0.42 +0.2 4,094,641 + CA264_17570 0.70 -0.1 4,094,760 + CA264_17570 0.85 -0.4 4,094,760 + CA264_17570 0.85 +1.2 4,094,848 - -0.3 4,094,852 + -0.7 4,094,879 - +0.6 4,094,879 - +0.2 4,094,879 - +0.2 4,094,887 + -0.1 4,094,888 - +0.4 4,094,888 - -2.2 4,094,895 + -0.7 4,094,944 + -0.2 4,094,972 - +0.8 4,094,979 - -1.4 4,094,979 - +0.3 4,094,999 - -0.3 4,095,135 + CA264_17575 0.38 +0.7 4,095,136 - CA264_17575 0.38 -0.4 4,095,142 + CA264_17575 0.40 +0.3 4,095,143 - CA264_17575 0.40 -0.6 4,095,143 - CA264_17575 0.40 -0.7 4,095,193 - CA264_17575 0.54 +0.1 4,095,201 - CA264_17575 0.56 -0.8 4,095,240 + CA264_17575 0.67 -4.4 4,095,240 + CA264_17575 0.67 -2.0 4,095,241 - CA264_17575 0.67 -0.5 4,095,378 - -0.4 4,095,380 - -0.7 4,095,383 + -1.6 4,095,384 - +0.2 4,095,390 - -1.5 4,095,521 - -0.4
Or see this region's nucleotide sequence