Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_16535

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_16525 and CA264_16530 are separated by 37 nucleotidesCA264_16530 and CA264_16535 are separated by 287 nucleotidesCA264_16535 and CA264_16540 are separated by 222 nucleotides CA264_16525: CA264_16525 - hypothetical protein, at 3,840,914 to 3,841,246 _16525 CA264_16530: CA264_16530 - hypothetical protein, at 3,841,284 to 3,841,667 _16530 CA264_16535: CA264_16535 - DNA polymerase I, at 3,841,955 to 3,844,801 _16535 CA264_16540: CA264_16540 - hypothetical protein, at 3,845,024 to 3,846,361 _16540 Position (kb) 3841 3842 3843 3844 3845Strain fitness (log2 ratio) -1 0 1 2at 3840.993 kb on + strand, within CA264_16525at 3841.032 kb on + strand, within CA264_16525at 3841.032 kb on + strand, within CA264_16525at 3841.033 kb on - strand, within CA264_16525at 3841.035 kb on - strand, within CA264_16525at 3841.035 kb on - strand, within CA264_16525at 3841.059 kb on + strand, within CA264_16525at 3841.174 kb on + strand, within CA264_16525at 3841.174 kb on + strand, within CA264_16525at 3841.226 kb on + strandat 3841.229 kb on + strandat 3841.229 kb on + strandat 3841.229 kb on + strandat 3841.229 kb on + strandat 3841.271 kb on - strandat 3841.281 kb on + strandat 3841.282 kb on - strandat 3841.282 kb on - strandat 3841.282 kb on - strandat 3841.282 kb on - strandat 3841.373 kb on + strand, within CA264_16530at 3841.373 kb on + strand, within CA264_16530at 3841.374 kb on - strand, within CA264_16530at 3841.383 kb on + strand, within CA264_16530at 3841.383 kb on + strand, within CA264_16530at 3841.383 kb on + strand, within CA264_16530at 3841.384 kb on - strand, within CA264_16530at 3841.391 kb on - strand, within CA264_16530at 3841.441 kb on - strand, within CA264_16530at 3841.441 kb on - strand, within CA264_16530at 3841.441 kb on - strand, within CA264_16530at 3841.651 kb on - strandat 3841.657 kb on - strandat 3841.657 kb on - strandat 3841.767 kb on - strandat 3841.769 kb on - strandat 3841.783 kb on + strandat 3841.888 kb on - strandat 3841.888 kb on - strandat 3841.893 kb on - strandat 3844.871 kb on + strandat 3844.878 kb on + strandat 3844.878 kb on + strandat 3844.929 kb on - strandat 3845.009 kb on - strandat 3845.033 kb on + strandat 3845.034 kb on - strandat 3845.041 kb on + strandat 3845.041 kb on + strandat 3845.046 kb on + strandat 3845.046 kb on + strandat 3845.047 kb on - strandat 3845.050 kb on + strandat 3845.050 kb on + strandat 3845.054 kb on - strandat 3845.080 kb on + strandat 3845.081 kb on - strandat 3845.081 kb on - strandat 3845.082 kb on + strandat 3845.082 kb on + strandat 3845.083 kb on - strandat 3845.085 kb on + strandat 3845.086 kb on - strandat 3845.135 kb on - strandat 3845.140 kb on + strandat 3845.149 kb on + strandat 3845.156 kb on + strandat 3845.156 kb on + strandat 3845.156 kb on + strandat 3845.166 kb on - strand, within CA264_16540at 3845.194 kb on - strand, within CA264_16540at 3845.270 kb on - strand, within CA264_16540at 3845.396 kb on - strand, within CA264_16540at 3845.476 kb on + strand, within CA264_16540at 3845.477 kb on - strand, within CA264_16540at 3845.490 kb on - strand, within CA264_16540at 3845.490 kb on - strand, within CA264_16540at 3845.490 kb on - strand, within CA264_16540at 3845.567 kb on - strand, within CA264_16540at 3845.614 kb on + strand, within CA264_16540at 3845.614 kb on + strand, within CA264_16540at 3845.631 kb on - strand, within CA264_16540at 3845.671 kb on - strand, within CA264_16540at 3845.748 kb on + strand, within CA264_16540at 3845.748 kb on + strand, within CA264_16540at 3845.748 kb on + strand, within CA264_16540at 3845.748 kb on + strand, within CA264_16540at 3845.749 kb on - strand, within CA264_16540at 3845.749 kb on - strand, within CA264_16540at 3845.791 kb on + strand, within CA264_16540

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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3,840,993 + CA264_16525 0.24 +0.6
3,841,032 + CA264_16525 0.35 -0.1
3,841,032 + CA264_16525 0.35 -0.5
3,841,033 - CA264_16525 0.36 +0.1
3,841,035 - CA264_16525 0.36 -0.9
3,841,035 - CA264_16525 0.36 -0.5
3,841,059 + CA264_16525 0.44 +0.4
3,841,174 + CA264_16525 0.78 +2.0
3,841,174 + CA264_16525 0.78 -0.4
3,841,226 + -1.0
3,841,229 + +0.8
3,841,229 + -0.3
3,841,229 + -0.3
3,841,229 + -0.2
3,841,271 - +1.2
3,841,281 + -1.7
3,841,282 - +1.4
3,841,282 - +0.9
3,841,282 - +0.1
3,841,282 - -1.0
3,841,373 + CA264_16530 0.23 +1.6
3,841,373 + CA264_16530 0.23 -1.0
3,841,374 - CA264_16530 0.23 +0.4
3,841,383 + CA264_16530 0.26 -0.6
3,841,383 + CA264_16530 0.26 -1.3
3,841,383 + CA264_16530 0.26 +0.1
3,841,384 - CA264_16530 0.26 +1.4
3,841,391 - CA264_16530 0.28 +0.4
3,841,441 - CA264_16530 0.41 +0.4
3,841,441 - CA264_16530 0.41 -0.4
3,841,441 - CA264_16530 0.41 +0.4
3,841,651 - -0.1
3,841,657 - +1.5
3,841,657 - -0.5
3,841,767 - -0.5
3,841,769 - -0.7
3,841,783 + -0.9
3,841,888 - +0.6
3,841,888 - +0.7
3,841,893 - -0.2
3,844,871 + +1.4
3,844,878 + +0.2
3,844,878 + -0.3
3,844,929 - -0.9
3,845,009 - -0.2
3,845,033 + +0.4
3,845,034 - +0.5
3,845,041 + -0.0
3,845,041 + +0.3
3,845,046 + +0.6
3,845,046 + +1.2
3,845,047 - -0.0
3,845,050 + +0.4
3,845,050 + -1.0
3,845,054 - +0.2
3,845,080 + -0.4
3,845,081 - -0.1
3,845,081 - +0.1
3,845,082 + +0.2
3,845,082 + -1.2
3,845,083 - +0.2
3,845,085 + -1.0
3,845,086 - +2.0
3,845,135 - +0.4
3,845,140 + -0.1
3,845,149 + +0.1
3,845,156 + -1.0
3,845,156 + +0.2
3,845,156 + -0.6
3,845,166 - CA264_16540 0.11 +0.5
3,845,194 - CA264_16540 0.13 +1.4
3,845,270 - CA264_16540 0.18 +1.3
3,845,396 - CA264_16540 0.28 +0.7
3,845,476 + CA264_16540 0.34 -0.7
3,845,477 - CA264_16540 0.34 -0.0
3,845,490 - CA264_16540 0.35 -0.2
3,845,490 - CA264_16540 0.35 +1.0
3,845,490 - CA264_16540 0.35 -0.2
3,845,567 - CA264_16540 0.41 -0.5
3,845,614 + CA264_16540 0.44 -0.5
3,845,614 + CA264_16540 0.44 +0.2
3,845,631 - CA264_16540 0.45 +0.0
3,845,671 - CA264_16540 0.48 +0.2
3,845,748 + CA264_16540 0.54 +0.8
3,845,748 + CA264_16540 0.54 +0.1
3,845,748 + CA264_16540 0.54 -1.0
3,845,748 + CA264_16540 0.54 +0.0
3,845,749 - CA264_16540 0.54 -0.1
3,845,749 - CA264_16540 0.54 +0.3
3,845,791 + CA264_16540 0.57 -1.1

Or see this region's nucleotide sequence