Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15615

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15610 and CA264_15615 are separated by 108 nucleotidesCA264_15615 and CA264_15620 are separated by 35 nucleotidesCA264_15620 and CA264_15625 are separated by 106 nucleotides CA264_15610: CA264_15610 - mechanosensitive ion channel protein MscS, at 3,649,782 to 3,651,149 _15610 CA264_15615: CA264_15615 - hypothetical protein, at 3,651,258 to 3,651,884 _15615 CA264_15620: CA264_15620 - hypothetical protein, at 3,651,920 to 3,652,381 _15620 CA264_15625: CA264_15625 - sterol desaturase, at 3,652,488 to 3,653,270 _15625 Position (kb) 3651 3652Strain fitness (log2 ratio) -2 -1 0 1 2at 3650.358 kb on - strand, within CA264_15610at 3650.360 kb on + strand, within CA264_15610at 3650.398 kb on + strand, within CA264_15610at 3650.637 kb on + strand, within CA264_15610at 3650.745 kb on + strand, within CA264_15610at 3650.745 kb on + strand, within CA264_15610at 3650.868 kb on + strand, within CA264_15610at 3650.869 kb on - strand, within CA264_15610at 3650.869 kb on - strand, within CA264_15610at 3650.872 kb on + strand, within CA264_15610at 3650.872 kb on + strand, within CA264_15610at 3650.872 kb on + strand, within CA264_15610at 3650.873 kb on - strand, within CA264_15610at 3650.902 kb on - strand, within CA264_15610at 3650.908 kb on + strand, within CA264_15610at 3651.134 kb on - strandat 3651.148 kb on - strandat 3651.160 kb on + strandat 3651.160 kb on + strandat 3651.161 kb on - strandat 3651.166 kb on - strandat 3651.166 kb on - strandat 3651.334 kb on - strand, within CA264_15615at 3651.401 kb on + strand, within CA264_15615at 3651.402 kb on - strand, within CA264_15615at 3651.670 kb on + strand, within CA264_15615at 3651.714 kb on + strand, within CA264_15615at 3651.724 kb on - strand, within CA264_15615at 3651.838 kb on - strandat 3651.838 kb on - strandat 3651.896 kb on - strandat 3651.914 kb on + strandat 3651.915 kb on - strandat 3651.974 kb on + strand, within CA264_15620at 3652.023 kb on + strand, within CA264_15620at 3652.023 kb on + strand, within CA264_15620at 3652.024 kb on - strand, within CA264_15620at 3652.090 kb on + strand, within CA264_15620at 3652.114 kb on + strand, within CA264_15620at 3652.175 kb on - strand, within CA264_15620at 3652.194 kb on + strand, within CA264_15620at 3652.194 kb on + strand, within CA264_15620at 3652.196 kb on + strand, within CA264_15620at 3652.197 kb on - strand, within CA264_15620at 3652.270 kb on + strand, within CA264_15620at 3652.316 kb on - strand, within CA264_15620at 3652.369 kb on + strandat 3652.370 kb on - strandat 3652.424 kb on - strandat 3652.425 kb on + strandat 3652.425 kb on + strandat 3652.470 kb on + strandat 3652.470 kb on + strandat 3652.491 kb on + strandat 3652.492 kb on - strandat 3652.547 kb on + strandat 3652.556 kb on + strandat 3652.598 kb on - strand, within CA264_15625at 3652.607 kb on - strand, within CA264_15625at 3652.720 kb on + strand, within CA264_15625at 3652.720 kb on + strand, within CA264_15625at 3652.721 kb on - strand, within CA264_15625at 3652.729 kb on + strand, within CA264_15625at 3652.730 kb on - strand, within CA264_15625at 3652.765 kb on + strand, within CA264_15625at 3652.875 kb on - strand, within CA264_15625at 3652.875 kb on - strand, within CA264_15625at 3652.875 kb on - strand, within CA264_15625

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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3,650,358 - CA264_15610 0.42 -1.1
3,650,360 + CA264_15610 0.42 -1.0
3,650,398 + CA264_15610 0.45 +0.7
3,650,637 + CA264_15610 0.62 +0.0
3,650,745 + CA264_15610 0.70 +0.2
3,650,745 + CA264_15610 0.70 -1.5
3,650,868 + CA264_15610 0.79 -0.8
3,650,869 - CA264_15610 0.79 -1.4
3,650,869 - CA264_15610 0.79 -1.1
3,650,872 + CA264_15610 0.80 -0.0
3,650,872 + CA264_15610 0.80 +1.4
3,650,872 + CA264_15610 0.80 -0.7
3,650,873 - CA264_15610 0.80 +0.2
3,650,902 - CA264_15610 0.82 -0.3
3,650,908 + CA264_15610 0.82 -1.1
3,651,134 - -0.3
3,651,148 - -2.7
3,651,160 + -0.6
3,651,160 + -0.0
3,651,161 - -0.4
3,651,166 - -0.1
3,651,166 - +0.4
3,651,334 - CA264_15615 0.12 +0.3
3,651,401 + CA264_15615 0.23 -0.2
3,651,402 - CA264_15615 0.23 -0.5
3,651,670 + CA264_15615 0.66 +0.6
3,651,714 + CA264_15615 0.73 +0.9
3,651,724 - CA264_15615 0.74 +0.2
3,651,838 - -0.5
3,651,838 - -0.4
3,651,896 - -0.2
3,651,914 + +0.0
3,651,915 - -1.6
3,651,974 + CA264_15620 0.12 +1.0
3,652,023 + CA264_15620 0.22 -0.4
3,652,023 + CA264_15620 0.22 -0.3
3,652,024 - CA264_15620 0.23 +0.3
3,652,090 + CA264_15620 0.37 +0.3
3,652,114 + CA264_15620 0.42 +0.3
3,652,175 - CA264_15620 0.55 +0.3
3,652,194 + CA264_15620 0.59 -0.5
3,652,194 + CA264_15620 0.59 +0.0
3,652,196 + CA264_15620 0.60 -1.2
3,652,197 - CA264_15620 0.60 -0.8
3,652,270 + CA264_15620 0.76 +1.4
3,652,316 - CA264_15620 0.86 +0.3
3,652,369 + -0.3
3,652,370 - +0.6
3,652,424 - -0.6
3,652,425 + +0.2
3,652,425 + -0.4
3,652,470 + -0.2
3,652,470 + +1.9
3,652,491 + -0.4
3,652,492 - +0.4
3,652,547 + +0.0
3,652,556 + -0.4
3,652,598 - CA264_15625 0.14 +0.0
3,652,607 - CA264_15625 0.15 +0.5
3,652,720 + CA264_15625 0.30 +0.2
3,652,720 + CA264_15625 0.30 -0.2
3,652,721 - CA264_15625 0.30 -0.1
3,652,729 + CA264_15625 0.31 +0.9
3,652,730 - CA264_15625 0.31 -0.8
3,652,765 + CA264_15625 0.35 +0.1
3,652,875 - CA264_15625 0.49 -0.3
3,652,875 - CA264_15625 0.49 +0.6
3,652,875 - CA264_15625 0.49 -0.5

Or see this region's nucleotide sequence