Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13910

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13905 and CA264_13910 are separated by 97 nucleotidesCA264_13910 and CA264_13915 are separated by 11 nucleotides CA264_13905: CA264_13905 - hybrid sensor histidine kinase/response regulator, at 3,245,248 to 3,246,480 _13905 CA264_13910: CA264_13910 - response regulator, at 3,246,578 to 3,247,027 _13910 CA264_13915: CA264_13915 - PAS domain-containing sensor histidine kinase, at 3,247,039 to 3,248,583 _13915 Position (kb) 3246 3247 3248Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3245.622 kb on - strand, within CA264_13905at 3245.649 kb on - strand, within CA264_13905at 3245.649 kb on - strand, within CA264_13905at 3245.714 kb on + strand, within CA264_13905at 3245.714 kb on + strand, within CA264_13905at 3245.714 kb on + strand, within CA264_13905at 3245.715 kb on - strand, within CA264_13905at 3245.761 kb on + strand, within CA264_13905at 3245.761 kb on + strand, within CA264_13905at 3245.762 kb on - strand, within CA264_13905at 3245.838 kb on + strand, within CA264_13905at 3246.318 kb on - strand, within CA264_13905at 3246.386 kb on + strandat 3246.431 kb on + strandat 3246.431 kb on + strandat 3246.432 kb on - strandat 3246.432 kb on - strandat 3246.480 kb on + strandat 3246.481 kb on - strandat 3246.511 kb on + strandat 3246.511 kb on + strandat 3246.511 kb on + strandat 3246.512 kb on - strandat 3246.612 kb on + strandat 3246.612 kb on + strandat 3246.612 kb on + strandat 3246.639 kb on - strand, within CA264_13910at 3246.694 kb on - strand, within CA264_13910at 3246.694 kb on - strand, within CA264_13910at 3246.846 kb on + strand, within CA264_13910at 3246.998 kb on + strandat 3246.998 kb on + strandat 3246.998 kb on + strandat 3246.998 kb on + strandat 3246.999 kb on - strandat 3246.999 kb on - strandat 3247.033 kb on + strandat 3247.033 kb on + strandat 3247.034 kb on - strandat 3247.822 kb on + strand, within CA264_13915at 3247.867 kb on + strand, within CA264_13915at 3247.867 kb on + strand, within CA264_13915at 3247.870 kb on - strand, within CA264_13915at 3247.873 kb on + strand, within CA264_13915at 3247.873 kb on + strand, within CA264_13915

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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3,245,622 - CA264_13905 0.30 -2.9
3,245,649 - CA264_13905 0.33 -0.1
3,245,649 - CA264_13905 0.33 -4.6
3,245,714 + CA264_13905 0.38 -0.3
3,245,714 + CA264_13905 0.38 -1.8
3,245,714 + CA264_13905 0.38 -0.3
3,245,715 - CA264_13905 0.38 -1.6
3,245,761 + CA264_13905 0.42 -2.0
3,245,761 + CA264_13905 0.42 -2.4
3,245,762 - CA264_13905 0.42 -2.0
3,245,838 + CA264_13905 0.48 +0.3
3,246,318 - CA264_13905 0.87 -1.0
3,246,386 + -1.4
3,246,431 + -1.3
3,246,431 + -0.2
3,246,432 - -0.5
3,246,432 - -1.7
3,246,480 + -1.7
3,246,481 - -2.2
3,246,511 + -0.5
3,246,511 + -1.2
3,246,511 + +0.1
3,246,512 - +0.1
3,246,612 + -1.3
3,246,612 + -0.7
3,246,612 + -1.1
3,246,639 - CA264_13910 0.14 -1.3
3,246,694 - CA264_13910 0.26 -0.4
3,246,694 - CA264_13910 0.26 -1.0
3,246,846 + CA264_13910 0.60 -1.0
3,246,998 + -0.4
3,246,998 + +1.2
3,246,998 + +1.3
3,246,998 + +1.0
3,246,999 - -3.5
3,246,999 - -1.0
3,247,033 + +0.9
3,247,033 + +2.3
3,247,034 - -0.2
3,247,822 + CA264_13915 0.51 +0.6
3,247,867 + CA264_13915 0.54 -1.2
3,247,867 + CA264_13915 0.54 -1.6
3,247,870 - CA264_13915 0.54 +0.4
3,247,873 + CA264_13915 0.54 -2.2
3,247,873 + CA264_13915 0.54 +0.2

Or see this region's nucleotide sequence