Experiment: m.b. D-Cycloserine 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_13875 and CA264_13880 are separated by 71 nucleotides CA264_13880 and CA264_13885 are separated by 241 nucleotides CA264_13885 and CA264_13890 are separated by 24 nucleotides
CA264_13875: CA264_13875 - hypothetical protein, at 3,239,277 to 3,240,101
_13875
CA264_13880: CA264_13880 - hypothetical protein, at 3,240,173 to 3,240,424
_13880
CA264_13885: CA264_13885 - DsbA family protein, at 3,240,666 to 3,241,460
_13885
CA264_13890: CA264_13890 - manganese catalase, at 3,241,485 to 3,242,429
_13890
Position (kb)
3240
3241
3242 Strain fitness (log2 ratio)
-2
-1
0
1 at 3239.701 kb on + strand, within CA264_13875 at 3239.701 kb on + strand, within CA264_13875 at 3239.820 kb on + strand, within CA264_13875 at 3239.821 kb on - strand, within CA264_13875 at 3240.010 kb on - strand, within CA264_13875 at 3240.080 kb on + strand at 3240.089 kb on + strand at 3240.090 kb on - strand at 3240.100 kb on - strand at 3240.111 kb on + strand at 3240.111 kb on + strand at 3240.112 kb on - strand at 3240.112 kb on - strand at 3240.112 kb on - strand at 3240.115 kb on + strand at 3240.115 kb on + strand at 3240.116 kb on - strand at 3240.117 kb on + strand at 3240.122 kb on - strand at 3240.122 kb on - strand at 3240.122 kb on - strand at 3240.259 kb on + strand, within CA264_13880 at 3240.260 kb on - strand, within CA264_13880 at 3240.269 kb on + strand, within CA264_13880 at 3240.269 kb on + strand, within CA264_13880 at 3240.284 kb on + strand, within CA264_13880 at 3240.287 kb on + strand, within CA264_13880 at 3240.287 kb on + strand, within CA264_13880 at 3240.288 kb on - strand, within CA264_13880 at 3240.288 kb on - strand, within CA264_13880 at 3240.317 kb on + strand, within CA264_13880 at 3240.317 kb on + strand, within CA264_13880 at 3240.318 kb on - strand, within CA264_13880 at 3240.383 kb on + strand, within CA264_13880 at 3240.410 kb on - strand at 3240.523 kb on + strand at 3240.524 kb on - strand at 3240.525 kb on + strand at 3240.570 kb on - strand at 3240.605 kb on + strand at 3240.605 kb on + strand at 3240.609 kb on + strand at 3240.610 kb on - strand at 3240.610 kb on - strand at 3240.642 kb on + strand at 3240.642 kb on + strand at 3240.642 kb on + strand at 3240.655 kb on + strand at 3240.733 kb on + strand at 3240.733 kb on + strand at 3240.734 kb on - strand at 3240.734 kb on - strand at 3240.768 kb on + strand, within CA264_13885 at 3240.769 kb on - strand, within CA264_13885 at 3241.084 kb on + strand, within CA264_13885 at 3241.133 kb on + strand, within CA264_13885 at 3241.169 kb on - strand, within CA264_13885 at 3241.202 kb on + strand, within CA264_13885 at 3241.205 kb on - strand, within CA264_13885 at 3241.210 kb on - strand, within CA264_13885 at 3241.306 kb on + strand, within CA264_13885 at 3241.468 kb on + strand at 3241.468 kb on + strand at 3241.469 kb on - strand at 3241.611 kb on - strand, within CA264_13890 at 3241.676 kb on + strand, within CA264_13890 at 3241.677 kb on - strand, within CA264_13890 at 3241.677 kb on - strand, within CA264_13890 at 3241.677 kb on - strand, within CA264_13890 at 3241.678 kb on + strand, within CA264_13890 at 3241.679 kb on - strand, within CA264_13890 at 3241.679 kb on - strand, within CA264_13890 at 3241.759 kb on + strand, within CA264_13890 at 3241.760 kb on - strand, within CA264_13890 at 3241.771 kb on + strand, within CA264_13890 at 3241.816 kb on - strand, within CA264_13890 at 3241.877 kb on + strand, within CA264_13890 at 3241.877 kb on + strand, within CA264_13890 at 3241.877 kb on + strand, within CA264_13890 at 3241.878 kb on - strand, within CA264_13890 at 3241.894 kb on + strand, within CA264_13890 at 3241.894 kb on + strand, within CA264_13890 at 3241.895 kb on - strand, within CA264_13890 at 3241.927 kb on + strand, within CA264_13890 at 3241.928 kb on - strand, within CA264_13890 at 3242.003 kb on - strand, within CA264_13890 at 3242.003 kb on - strand, within CA264_13890 at 3242.003 kb on - strand, within CA264_13890 at 3242.006 kb on + strand, within CA264_13890 at 3242.196 kb on + strand, within CA264_13890 at 3242.261 kb on - strand, within CA264_13890 at 3242.261 kb on - strand, within CA264_13890 at 3242.261 kb on - strand, within CA264_13890 at 3242.312 kb on + strand, within CA264_13890 at 3242.312 kb on + strand, within CA264_13890 at 3242.313 kb on - strand, within CA264_13890 at 3242.313 kb on - strand, within CA264_13890 at 3242.406 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml remove 3,239,701 + CA264_13875 0.51 +0.4 3,239,701 + CA264_13875 0.51 +0.9 3,239,820 + CA264_13875 0.66 -0.4 3,239,821 - CA264_13875 0.66 +0.8 3,240,010 - CA264_13875 0.89 +0.4 3,240,080 + -0.3 3,240,089 + -1.4 3,240,090 - +0.9 3,240,100 - -0.1 3,240,111 + +0.8 3,240,111 + +0.0 3,240,112 - +0.0 3,240,112 - -0.1 3,240,112 - +0.0 3,240,115 + +0.5 3,240,115 + -1.7 3,240,116 - -0.4 3,240,117 + +0.2 3,240,122 - -0.6 3,240,122 - +0.5 3,240,122 - -1.2 3,240,259 + CA264_13880 0.34 -0.1 3,240,260 - CA264_13880 0.35 +0.1 3,240,269 + CA264_13880 0.38 -0.7 3,240,269 + CA264_13880 0.38 +0.0 3,240,284 + CA264_13880 0.44 +1.2 3,240,287 + CA264_13880 0.45 +0.5 3,240,287 + CA264_13880 0.45 +0.6 3,240,288 - CA264_13880 0.46 -1.8 3,240,288 - CA264_13880 0.46 +1.1 3,240,317 + CA264_13880 0.57 +0.6 3,240,317 + CA264_13880 0.57 -1.3 3,240,318 - CA264_13880 0.58 -1.1 3,240,383 + CA264_13880 0.83 +0.3 3,240,410 - +0.8 3,240,523 + +0.9 3,240,524 - -0.3 3,240,525 + -1.6 3,240,570 - -0.2 3,240,605 + +0.6 3,240,605 + -0.1 3,240,609 + -0.7 3,240,610 - +0.8 3,240,610 - -0.4 3,240,642 + +0.2 3,240,642 + -0.2 3,240,642 + +0.8 3,240,655 + -0.1 3,240,733 + -0.5 3,240,733 + -0.1 3,240,734 - +0.5 3,240,734 - -0.5 3,240,768 + CA264_13885 0.13 -0.4 3,240,769 - CA264_13885 0.13 -0.9 3,241,084 + CA264_13885 0.53 +0.0 3,241,133 + CA264_13885 0.59 -0.1 3,241,169 - CA264_13885 0.63 +0.5 3,241,202 + CA264_13885 0.67 -2.1 3,241,205 - CA264_13885 0.68 -1.2 3,241,210 - CA264_13885 0.68 +0.3 3,241,306 + CA264_13885 0.81 +0.4 3,241,468 + +0.7 3,241,468 + +0.5 3,241,469 - -0.4 3,241,611 - CA264_13890 0.13 -1.0 3,241,676 + CA264_13890 0.20 +0.4 3,241,677 - CA264_13890 0.20 +1.5 3,241,677 - CA264_13890 0.20 -0.2 3,241,677 - CA264_13890 0.20 -0.0 3,241,678 + CA264_13890 0.20 -0.1 3,241,679 - CA264_13890 0.21 -1.2 3,241,679 - CA264_13890 0.21 +0.4 3,241,759 + CA264_13890 0.29 -2.1 3,241,760 - CA264_13890 0.29 +0.7 3,241,771 + CA264_13890 0.30 -0.1 3,241,816 - CA264_13890 0.35 +0.6 3,241,877 + CA264_13890 0.41 -0.9 3,241,877 + CA264_13890 0.41 +0.3 3,241,877 + CA264_13890 0.41 -0.6 3,241,878 - CA264_13890 0.42 -0.2 3,241,894 + CA264_13890 0.43 +0.6 3,241,894 + CA264_13890 0.43 +0.9 3,241,895 - CA264_13890 0.43 +0.5 3,241,927 + CA264_13890 0.47 -0.4 3,241,928 - CA264_13890 0.47 +0.4 3,242,003 - CA264_13890 0.55 -0.5 3,242,003 - CA264_13890 0.55 -0.2 3,242,003 - CA264_13890 0.55 +0.8 3,242,006 + CA264_13890 0.55 +0.5 3,242,196 + CA264_13890 0.75 +0.2 3,242,261 - CA264_13890 0.82 -0.2 3,242,261 - CA264_13890 0.82 -1.1 3,242,261 - CA264_13890 0.82 +1.3 3,242,312 + CA264_13890 0.88 -0.8 3,242,312 + CA264_13890 0.88 +0.6 3,242,313 - CA264_13890 0.88 +0.4 3,242,313 - CA264_13890 0.88 -0.5 3,242,406 + -0.4
Or see this region's nucleotide sequence