Experiment: m.b. D-Cycloserine 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_13290 and CA264_13295 are separated by 223 nucleotides CA264_13295 and CA264_13300 are separated by 6 nucleotides CA264_13300 and CA264_13305 are separated by 143 nucleotides
CA264_13290: CA264_13290 - GAF domain-containing protein, at 3,097,131 to 3,099,422
_13290
CA264_13295: CA264_13295 - rhomboid family intramembrane serine protease, at 3,099,646 to 3,100,554
_13295
CA264_13300: CA264_13300 - rhomboid family intramembrane serine protease, at 3,100,561 to 3,101,340
_13300
CA264_13305: CA264_13305 - DNA mismatch repair protein MutL, at 3,101,484 to 3,103,346
_13305
Position (kb)
3099
3100
3101 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3098.704 kb on - strand, within CA264_13290 at 3098.759 kb on + strand, within CA264_13290 at 3098.759 kb on + strand, within CA264_13290 at 3098.769 kb on - strand, within CA264_13290 at 3098.769 kb on - strand, within CA264_13290 at 3098.820 kb on + strand, within CA264_13290 at 3098.821 kb on - strand, within CA264_13290 at 3098.830 kb on - strand, within CA264_13290 at 3098.929 kb on + strand, within CA264_13290 at 3098.937 kb on - strand, within CA264_13290 at 3098.967 kb on - strand, within CA264_13290 at 3099.011 kb on - strand, within CA264_13290 at 3099.048 kb on + strand, within CA264_13290 at 3099.090 kb on + strand, within CA264_13290 at 3099.090 kb on + strand, within CA264_13290 at 3099.091 kb on - strand, within CA264_13290 at 3099.091 kb on - strand, within CA264_13290 at 3099.179 kb on - strand, within CA264_13290 at 3099.258 kb on + strand at 3099.318 kb on - strand at 3099.337 kb on + strand at 3099.386 kb on - strand at 3099.400 kb on - strand at 3099.425 kb on + strand at 3099.425 kb on + strand at 3099.426 kb on - strand at 3099.426 kb on - strand at 3099.464 kb on + strand at 3099.481 kb on + strand at 3099.485 kb on - strand at 3099.925 kb on - strand, within CA264_13295 at 3099.967 kb on - strand, within CA264_13295 at 3100.028 kb on + strand, within CA264_13295 at 3100.028 kb on + strand, within CA264_13295 at 3100.028 kb on + strand, within CA264_13295 at 3100.029 kb on - strand, within CA264_13295 at 3100.099 kb on + strand, within CA264_13295 at 3100.135 kb on - strand at 3100.135 kb on - strand, within CA264_13295 at 3100.224 kb on - strand, within CA264_13295 at 3100.224 kb on - strand, within CA264_13295 at 3100.281 kb on - strand, within CA264_13295 at 3100.281 kb on - strand, within CA264_13295 at 3100.413 kb on - strand, within CA264_13295 at 3100.507 kb on - strand at 3100.534 kb on + strand at 3100.535 kb on - strand at 3100.535 kb on - strand at 3100.537 kb on - strand at 3100.546 kb on + strand at 3100.547 kb on - strand at 3100.549 kb on - strand at 3100.549 kb on - strand at 3100.556 kb on - strand at 3100.562 kb on + strand at 3100.562 kb on + strand at 3100.565 kb on + strand at 3100.565 kb on + strand at 3100.565 kb on + strand at 3100.566 kb on - strand at 3100.566 kb on - strand at 3100.566 kb on - strand at 3100.570 kb on - strand at 3100.581 kb on + strand at 3100.582 kb on - strand at 3100.603 kb on + strand at 3100.603 kb on + strand at 3100.603 kb on + strand at 3100.604 kb on - strand at 3100.604 kb on - strand at 3100.605 kb on + strand at 3100.605 kb on + strand at 3100.606 kb on - strand at 3100.645 kb on + strand, within CA264_13300 at 3100.645 kb on + strand, within CA264_13300 at 3100.680 kb on - strand, within CA264_13300 at 3100.729 kb on + strand, within CA264_13300 at 3100.730 kb on - strand, within CA264_13300 at 3100.730 kb on - strand, within CA264_13300 at 3100.730 kb on - strand, within CA264_13300 at 3100.730 kb on - strand, within CA264_13300 at 3100.850 kb on + strand, within CA264_13300 at 3100.850 kb on + strand, within CA264_13300 at 3100.850 kb on + strand, within CA264_13300 at 3100.851 kb on - strand, within CA264_13300 at 3100.877 kb on - strand, within CA264_13300 at 3100.880 kb on + strand, within CA264_13300 at 3100.880 kb on + strand, within CA264_13300 at 3100.881 kb on - strand, within CA264_13300 at 3100.881 kb on - strand, within CA264_13300 at 3100.943 kb on + strand, within CA264_13300 at 3100.959 kb on - strand, within CA264_13300 at 3100.959 kb on - strand, within CA264_13300 at 3100.959 kb on - strand, within CA264_13300 at 3100.964 kb on + strand, within CA264_13300 at 3100.964 kb on + strand, within CA264_13300 at 3100.994 kb on + strand, within CA264_13300 at 3100.994 kb on + strand, within CA264_13300 at 3101.136 kb on + strand, within CA264_13300 at 3101.235 kb on - strand, within CA264_13300 at 3101.237 kb on + strand, within CA264_13300 at 3101.237 kb on + strand, within CA264_13300 at 3101.264 kb on - strand at 3101.354 kb on + strand at 3101.457 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml remove 3,098,704 - CA264_13290 0.69 -0.4 3,098,759 + CA264_13290 0.71 +0.1 3,098,759 + CA264_13290 0.71 -1.2 3,098,769 - CA264_13290 0.71 -0.4 3,098,769 - CA264_13290 0.71 +0.6 3,098,820 + CA264_13290 0.74 +0.1 3,098,821 - CA264_13290 0.74 -0.1 3,098,830 - CA264_13290 0.74 +0.0 3,098,929 + CA264_13290 0.78 -0.9 3,098,937 - CA264_13290 0.79 -0.4 3,098,967 - CA264_13290 0.80 -0.7 3,099,011 - CA264_13290 0.82 -0.4 3,099,048 + CA264_13290 0.84 +0.8 3,099,090 + CA264_13290 0.85 -0.0 3,099,090 + CA264_13290 0.85 -0.6 3,099,091 - CA264_13290 0.86 -1.4 3,099,091 - CA264_13290 0.86 -0.6 3,099,179 - CA264_13290 0.89 +0.6 3,099,258 + +0.4 3,099,318 - +0.3 3,099,337 + +0.3 3,099,386 - +1.1 3,099,400 - -1.3 3,099,425 + +0.8 3,099,425 + +1.0 3,099,426 - +0.9 3,099,426 - +0.4 3,099,464 + -1.3 3,099,481 + +0.5 3,099,485 - -0.0 3,099,925 - CA264_13295 0.31 -0.4 3,099,967 - CA264_13295 0.35 -0.6 3,100,028 + CA264_13295 0.42 -0.1 3,100,028 + CA264_13295 0.42 +0.2 3,100,028 + CA264_13295 0.42 -0.9 3,100,029 - CA264_13295 0.42 -1.3 3,100,099 + CA264_13295 0.50 -0.6 3,100,135 - -0.1 3,100,135 - CA264_13295 0.54 +0.1 3,100,224 - CA264_13295 0.64 -0.4 3,100,224 - CA264_13295 0.64 +0.4 3,100,281 - CA264_13295 0.70 +1.9 3,100,281 - CA264_13295 0.70 -1.9 3,100,413 - CA264_13295 0.84 +0.5 3,100,507 - -0.9 3,100,534 + +0.1 3,100,535 - -2.2 3,100,535 - -0.6 3,100,537 - -0.9 3,100,546 + +0.3 3,100,547 - +0.5 3,100,549 - -0.1 3,100,549 - +0.2 3,100,556 - +0.4 3,100,562 + -0.0 3,100,562 + +0.3 3,100,565 + -0.1 3,100,565 + -0.2 3,100,565 + +0.7 3,100,566 - -0.6 3,100,566 - +0.6 3,100,566 - -0.3 3,100,570 - +0.7 3,100,581 + +0.9 3,100,582 - -0.2 3,100,603 + +0.1 3,100,603 + -1.2 3,100,603 + +0.1 3,100,604 - +0.7 3,100,604 - +0.2 3,100,605 + -1.0 3,100,605 + +0.8 3,100,606 - +2.2 3,100,645 + CA264_13300 0.11 -0.1 3,100,645 + CA264_13300 0.11 +0.1 3,100,680 - CA264_13300 0.15 +0.4 3,100,729 + CA264_13300 0.22 -1.9 3,100,730 - CA264_13300 0.22 +2.3 3,100,730 - CA264_13300 0.22 -1.0 3,100,730 - CA264_13300 0.22 -0.4 3,100,730 - CA264_13300 0.22 +0.2 3,100,850 + CA264_13300 0.37 +0.7 3,100,850 + CA264_13300 0.37 +0.5 3,100,850 + CA264_13300 0.37 +0.6 3,100,851 - CA264_13300 0.37 +0.5 3,100,877 - CA264_13300 0.41 +1.0 3,100,880 + CA264_13300 0.41 +0.2 3,100,880 + CA264_13300 0.41 +0.8 3,100,881 - CA264_13300 0.41 -0.8 3,100,881 - CA264_13300 0.41 +0.6 3,100,943 + CA264_13300 0.49 -0.6 3,100,959 - CA264_13300 0.51 -0.3 3,100,959 - CA264_13300 0.51 +0.6 3,100,959 - CA264_13300 0.51 +0.4 3,100,964 + CA264_13300 0.52 -0.1 3,100,964 + CA264_13300 0.52 +0.6 3,100,994 + CA264_13300 0.56 +1.4 3,100,994 + CA264_13300 0.56 +0.2 3,101,136 + CA264_13300 0.74 -0.0 3,101,235 - CA264_13300 0.86 +0.2 3,101,237 + CA264_13300 0.87 -0.3 3,101,237 + CA264_13300 0.87 +0.5 3,101,264 - -0.1 3,101,354 + +0.4 3,101,457 + +1.4
Or see this region's nucleotide sequence