Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_12920

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_12915 and CA264_12920 are separated by 168 nucleotidesCA264_12920 and CA264_12925 are separated by 88 nucleotidesCA264_12925 and CA264_12930 are separated by 106 nucleotides CA264_12915: CA264_12915 - oligopeptidase B, at 3,010,529 to 3,012,727 _12915 CA264_12920: CA264_12920 - N-acetylmuramoyl-L-alanine amidase, at 3,012,896 to 3,013,531 _12920 CA264_12925: CA264_12925 - hypothetical protein, at 3,013,620 to 3,014,410 _12925 CA264_12930: CA264_12930 - cell wall hydrolase, at 3,014,517 to 3,015,518 _12930 Position (kb) 3012 3013 3014Strain fitness (log2 ratio) -1 0 1 2at 3012.364 kb on + strand, within CA264_12915at 3012.366 kb on + strand, within CA264_12915at 3012.366 kb on + strand, within CA264_12915at 3012.389 kb on - strand, within CA264_12915at 3012.389 kb on - strand, within CA264_12915at 3012.390 kb on + strand, within CA264_12915at 3012.390 kb on + strand, within CA264_12915at 3012.443 kb on + strand, within CA264_12915at 3012.444 kb on - strand, within CA264_12915at 3012.446 kb on + strand, within CA264_12915at 3012.446 kb on + strand, within CA264_12915at 3012.453 kb on - strand, within CA264_12915at 3012.541 kb on - strandat 3012.598 kb on + strandat 3012.599 kb on - strandat 3012.725 kb on + strandat 3012.751 kb on + strandat 3012.754 kb on - strandat 3012.814 kb on - strandat 3012.875 kb on + strandat 3012.880 kb on - strandat 3012.880 kb on - strandat 3013.059 kb on + strand, within CA264_12920at 3013.148 kb on + strand, within CA264_12920at 3013.245 kb on - strand, within CA264_12920at 3013.389 kb on - strand, within CA264_12920at 3013.389 kb on - strand, within CA264_12920at 3013.390 kb on + strand, within CA264_12920at 3013.392 kb on + strand, within CA264_12920at 3013.392 kb on + strand, within CA264_12920at 3013.431 kb on + strand, within CA264_12920at 3013.432 kb on - strand, within CA264_12920at 3013.484 kb on + strandat 3014.060 kb on + strand, within CA264_12925at 3014.290 kb on - strand, within CA264_12925at 3014.455 kb on + strandat 3014.490 kb on + strandat 3014.491 kb on - strandat 3014.519 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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3,012,364 + CA264_12915 0.83 +0.7
3,012,366 + CA264_12915 0.84 -0.2
3,012,366 + CA264_12915 0.84 -0.5
3,012,389 - CA264_12915 0.85 -0.3
3,012,389 - CA264_12915 0.85 -0.0
3,012,390 + CA264_12915 0.85 +0.1
3,012,390 + CA264_12915 0.85 -0.7
3,012,443 + CA264_12915 0.87 +0.0
3,012,444 - CA264_12915 0.87 -0.4
3,012,446 + CA264_12915 0.87 +0.8
3,012,446 + CA264_12915 0.87 -0.2
3,012,453 - CA264_12915 0.87 +0.2
3,012,541 - -0.3
3,012,598 + +0.8
3,012,599 - +0.4
3,012,725 + -0.5
3,012,751 + -0.4
3,012,754 - -0.2
3,012,814 - -1.6
3,012,875 + -0.3
3,012,880 - -0.2
3,012,880 - -0.2
3,013,059 + CA264_12920 0.26 -1.4
3,013,148 + CA264_12920 0.40 +0.1
3,013,245 - CA264_12920 0.55 +0.0
3,013,389 - CA264_12920 0.78 +0.3
3,013,389 - CA264_12920 0.78 +1.3
3,013,390 + CA264_12920 0.78 +0.7
3,013,392 + CA264_12920 0.78 +2.1
3,013,392 + CA264_12920 0.78 -0.6
3,013,431 + CA264_12920 0.84 +0.2
3,013,432 - CA264_12920 0.84 +0.0
3,013,484 + +0.3
3,014,060 + CA264_12925 0.56 +1.0
3,014,290 - CA264_12925 0.85 +0.5
3,014,455 + -0.5
3,014,490 + +0.0
3,014,491 - +0.1
3,014,519 - +1.0

Or see this region's nucleotide sequence