Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_12570

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_12565 and CA264_12570 are separated by 193 nucleotidesCA264_12570 and CA264_12575 are separated by 191 nucleotidesCA264_12575 and CA264_12580 are separated by 51 nucleotides CA264_12565: CA264_12565 - competence/damage-inducible protein A, at 2,931,769 to 2,933,028 _12565 CA264_12570: CA264_12570 - 2-oxoglutarate dehydrogenase, at 2,933,222 to 2,934,589 _12570 CA264_12575: CA264_12575 - hypothetical protein, at 2,934,781 to 2,935,296 _12575 CA264_12580: CA264_12580 - hypothetical protein, at 2,935,348 to 2,935,959 _12580 Position (kb) 2933 2934 2935Strain fitness (log2 ratio) -3 -2 -1 0 1at 2932.320 kb on - strand, within CA264_12565at 2932.320 kb on - strand, within CA264_12565at 2932.408 kb on + strand, within CA264_12565at 2932.408 kb on + strand, within CA264_12565at 2932.409 kb on - strand, within CA264_12565at 2932.409 kb on - strand, within CA264_12565at 2932.651 kb on - strand, within CA264_12565at 2932.651 kb on - strand, within CA264_12565at 2932.689 kb on - strand, within CA264_12565at 2933.013 kb on + strandat 2933.013 kb on + strandat 2933.031 kb on + strandat 2933.167 kb on - strandat 2933.167 kb on - strandat 2933.167 kb on - strandat 2933.168 kb on + strandat 2933.168 kb on + strandat 2933.168 kb on + strandat 2933.169 kb on - strandat 2933.169 kb on - strandat 2933.169 kb on - strandat 2933.169 kb on - strandat 2933.173 kb on - strandat 2933.173 kb on - strandat 2933.173 kb on - strandat 2933.174 kb on + strandat 2933.212 kb on - strandat 2933.222 kb on - strandat 2933.222 kb on - strandat 2933.222 kb on - strandat 2933.233 kb on - strandat 2934.588 kb on - strandat 2934.639 kb on + strandat 2934.640 kb on - strandat 2934.640 kb on - strandat 2934.773 kb on - strandat 2934.804 kb on - strandat 2934.841 kb on + strand, within CA264_12575at 2934.841 kb on + strand, within CA264_12575at 2934.841 kb on + strand, within CA264_12575at 2934.842 kb on - strand, within CA264_12575at 2934.957 kb on - strand, within CA264_12575at 2934.957 kb on - strand, within CA264_12575at 2934.957 kb on - strand, within CA264_12575at 2935.199 kb on - strand, within CA264_12575at 2935.201 kb on + strand, within CA264_12575at 2935.201 kb on + strand, within CA264_12575at 2935.226 kb on - strand, within CA264_12575at 2935.226 kb on - strand, within CA264_12575at 2935.241 kb on - strand, within CA264_12575at 2935.293 kb on - strandat 2935.293 kb on - strandat 2935.295 kb on - strandat 2935.295 kb on - strandat 2935.295 kb on - strandat 2935.325 kb on + strandat 2935.326 kb on - strandat 2935.326 kb on - strandat 2935.327 kb on + strandat 2935.327 kb on + strandat 2935.328 kb on - strandat 2935.332 kb on + strandat 2935.335 kb on - strandat 2935.355 kb on + strandat 2935.358 kb on + strandat 2935.358 kb on + strandat 2935.359 kb on - strandat 2935.359 kb on - strandat 2935.359 kb on - strandat 2935.412 kb on + strand, within CA264_12580at 2935.412 kb on + strand, within CA264_12580at 2935.413 kb on - strand, within CA264_12580at 2935.474 kb on - strand, within CA264_12580at 2935.573 kb on + strand, within CA264_12580at 2935.574 kb on - strand, within CA264_12580at 2935.574 kb on - strand, within CA264_12580

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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2,932,320 - CA264_12565 0.44 +0.4
2,932,320 - CA264_12565 0.44 -0.1
2,932,408 + CA264_12565 0.51 +1.1
2,932,408 + CA264_12565 0.51 -0.6
2,932,409 - CA264_12565 0.51 -0.6
2,932,409 - CA264_12565 0.51 +0.1
2,932,651 - CA264_12565 0.70 +0.5
2,932,651 - CA264_12565 0.70 -0.1
2,932,689 - CA264_12565 0.73 -0.2
2,933,013 + -0.3
2,933,013 + -1.1
2,933,031 + -0.3
2,933,167 - -1.3
2,933,167 - +0.6
2,933,167 - +1.0
2,933,168 + -0.2
2,933,168 + +0.2
2,933,168 + +0.3
2,933,169 - +1.0
2,933,169 - +0.1
2,933,169 - +0.4
2,933,169 - +0.2
2,933,173 - +0.8
2,933,173 - +1.5
2,933,173 - +0.2
2,933,174 + -1.0
2,933,212 - -0.7
2,933,222 - -0.2
2,933,222 - -0.6
2,933,222 - -0.0
2,933,233 - +0.1
2,934,588 - +0.1
2,934,639 + +0.8
2,934,640 - -2.4
2,934,640 - -0.9
2,934,773 - -0.8
2,934,804 - +0.6
2,934,841 + CA264_12575 0.12 -0.2
2,934,841 + CA264_12575 0.12 +0.7
2,934,841 + CA264_12575 0.12 +0.4
2,934,842 - CA264_12575 0.12 -1.1
2,934,957 - CA264_12575 0.34 -3.4
2,934,957 - CA264_12575 0.34 -0.2
2,934,957 - CA264_12575 0.34 -0.1
2,935,199 - CA264_12575 0.81 -1.0
2,935,201 + CA264_12575 0.81 -1.2
2,935,201 + CA264_12575 0.81 -0.7
2,935,226 - CA264_12575 0.86 -0.3
2,935,226 - CA264_12575 0.86 -2.1
2,935,241 - CA264_12575 0.89 +0.8
2,935,293 - -0.4
2,935,293 - +0.3
2,935,295 - +0.4
2,935,295 - -0.6
2,935,295 - +1.1
2,935,325 + -0.8
2,935,326 - +0.0
2,935,326 - +0.4
2,935,327 + +0.3
2,935,327 + -0.4
2,935,328 - +0.3
2,935,332 + +0.6
2,935,335 - -0.1
2,935,355 + -0.3
2,935,358 + -0.1
2,935,358 + +0.1
2,935,359 - -0.2
2,935,359 - -0.4
2,935,359 - -0.8
2,935,412 + CA264_12580 0.10 -0.5
2,935,412 + CA264_12580 0.10 -0.8
2,935,413 - CA264_12580 0.11 -1.2
2,935,474 - CA264_12580 0.21 -0.3
2,935,573 + CA264_12580 0.37 +0.4
2,935,574 - CA264_12580 0.37 -0.2
2,935,574 - CA264_12580 0.37 -0.4

Or see this region's nucleotide sequence