Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_12170

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_12165 and CA264_12170 are separated by 97 nucleotidesCA264_12170 and CA264_12175 overlap by 361 nucleotidesCA264_12175 and CA264_12180 are separated by 123 nucleotides CA264_12165: CA264_12165 - hypothetical protein, at 2,836,423 to 2,837,733 _12165 CA264_12170: CA264_12170 - hypothetical protein, at 2,837,831 to 2,838,925 _12170 CA264_12175: CA264_12175 - hypothetical protein, at 2,838,565 to 2,839,107 _12175 CA264_12180: CA264_12180 - hypothetical protein, at 2,839,231 to 2,839,929 _12180 Position (kb) 2837 2838 2839Strain fitness (log2 ratio) -2 -1 0 1 2at 2836.837 kb on + strand, within CA264_12165at 2836.837 kb on + strand, within CA264_12165at 2836.881 kb on + strand, within CA264_12165at 2837.115 kb on + strand, within CA264_12165at 2837.116 kb on - strand, within CA264_12165at 2837.145 kb on + strand, within CA264_12165at 2837.145 kb on + strand, within CA264_12165at 2837.146 kb on - strand, within CA264_12165at 2837.146 kb on - strand, within CA264_12165at 2837.175 kb on + strand, within CA264_12165at 2837.194 kb on - strand, within CA264_12165at 2837.240 kb on + strand, within CA264_12165at 2837.339 kb on + strand, within CA264_12165at 2837.423 kb on - strand, within CA264_12165at 2837.423 kb on - strand, within CA264_12165at 2837.424 kb on + strand, within CA264_12165at 2837.425 kb on - strand, within CA264_12165at 2837.428 kb on + strand, within CA264_12165at 2837.529 kb on - strand, within CA264_12165at 2837.614 kb on - strandat 2837.616 kb on - strandat 2837.628 kb on + strandat 2837.701 kb on + strandat 2837.732 kb on - strandat 2837.734 kb on + strandat 2837.783 kb on + strandat 2837.794 kb on + strandat 2837.794 kb on + strandat 2837.936 kb on + strandat 2837.936 kb on + strandat 2837.942 kb on + strand, within CA264_12170at 2837.943 kb on - strand, within CA264_12170at 2837.943 kb on - strand, within CA264_12170at 2837.943 kb on - strand, within CA264_12170at 2837.943 kb on - strand, within CA264_12170at 2838.414 kb on + strand, within CA264_12170at 2838.414 kb on + strand, within CA264_12170at 2838.436 kb on - strand, within CA264_12170at 2838.471 kb on - strand, within CA264_12170at 2838.472 kb on + strand, within CA264_12170at 2838.473 kb on - strand, within CA264_12170at 2838.954 kb on - strand, within CA264_12175at 2839.030 kb on - strand, within CA264_12175at 2839.032 kb on - strand, within CA264_12175at 2839.062 kb on + strandat 2839.194 kb on + strandat 2839.196 kb on + strandat 2839.197 kb on - strandat 2839.216 kb on + strandat 2839.275 kb on - strandat 2839.330 kb on + strand, within CA264_12180at 2839.390 kb on - strand, within CA264_12180at 2839.454 kb on + strand, within CA264_12180at 2839.472 kb on + strand, within CA264_12180at 2839.473 kb on - strand, within CA264_12180at 2839.473 kb on - strand, within CA264_12180at 2839.527 kb on - strand, within CA264_12180at 2839.535 kb on + strand, within CA264_12180at 2839.536 kb on - strand, within CA264_12180at 2839.715 kb on - strand, within CA264_12180at 2839.736 kb on - strand, within CA264_12180

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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2,836,837 + CA264_12165 0.32 +0.3
2,836,837 + CA264_12165 0.32 +0.8
2,836,881 + CA264_12165 0.35 +0.2
2,837,115 + CA264_12165 0.53 -1.0
2,837,116 - CA264_12165 0.53 +0.6
2,837,145 + CA264_12165 0.55 -1.2
2,837,145 + CA264_12165 0.55 +0.3
2,837,146 - CA264_12165 0.55 +0.4
2,837,146 - CA264_12165 0.55 +0.5
2,837,175 + CA264_12165 0.57 +0.7
2,837,194 - CA264_12165 0.59 +0.2
2,837,240 + CA264_12165 0.62 +0.1
2,837,339 + CA264_12165 0.70 -0.2
2,837,423 - CA264_12165 0.76 -1.6
2,837,423 - CA264_12165 0.76 +0.2
2,837,424 + CA264_12165 0.76 +0.6
2,837,425 - CA264_12165 0.76 +0.2
2,837,428 + CA264_12165 0.77 -1.8
2,837,529 - CA264_12165 0.84 +0.2
2,837,614 - +0.2
2,837,616 - +0.2
2,837,628 + -0.7
2,837,701 + +2.1
2,837,732 - +0.8
2,837,734 + +0.7
2,837,783 + -0.4
2,837,794 + -0.2
2,837,794 + +0.7
2,837,936 + +0.2
2,837,936 + +0.4
2,837,942 + CA264_12170 0.10 +0.7
2,837,943 - CA264_12170 0.10 +0.3
2,837,943 - CA264_12170 0.10 +0.6
2,837,943 - CA264_12170 0.10 +0.0
2,837,943 - CA264_12170 0.10 -0.1
2,838,414 + CA264_12170 0.53 +0.7
2,838,414 + CA264_12170 0.53 -0.2
2,838,436 - CA264_12170 0.55 +0.4
2,838,471 - CA264_12170 0.58 +0.2
2,838,472 + CA264_12170 0.59 -0.4
2,838,473 - CA264_12170 0.59 -1.7
2,838,954 - CA264_12175 0.72 +0.5
2,839,030 - CA264_12175 0.86 +1.2
2,839,032 - CA264_12175 0.86 -0.0
2,839,062 + +1.1
2,839,194 + -0.3
2,839,196 + -0.4
2,839,197 - -0.7
2,839,216 + -0.4
2,839,275 - -0.5
2,839,330 + CA264_12180 0.14 -0.0
2,839,390 - CA264_12180 0.23 -1.9
2,839,454 + CA264_12180 0.32 -0.3
2,839,472 + CA264_12180 0.34 +0.2
2,839,473 - CA264_12180 0.35 -1.2
2,839,473 - CA264_12180 0.35 -0.2
2,839,527 - CA264_12180 0.42 -1.0
2,839,535 + CA264_12180 0.43 +1.1
2,839,536 - CA264_12180 0.44 -0.2
2,839,715 - CA264_12180 0.69 +0.7
2,839,736 - CA264_12180 0.72 +0.1

Or see this region's nucleotide sequence