Experiment: m.b. D-Cycloserine 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_12165 and CA264_12170 are separated by 97 nucleotides CA264_12170 and CA264_12175 overlap by 361 nucleotides CA264_12175 and CA264_12180 are separated by 123 nucleotides
CA264_12165: CA264_12165 - hypothetical protein, at 2,836,423 to 2,837,733
_12165
CA264_12170: CA264_12170 - hypothetical protein, at 2,837,831 to 2,838,925
_12170
CA264_12175: CA264_12175 - hypothetical protein, at 2,838,565 to 2,839,107
_12175
CA264_12180: CA264_12180 - hypothetical protein, at 2,839,231 to 2,839,929
_12180
Position (kb)
2837
2838
2839 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2836.837 kb on + strand, within CA264_12165 at 2836.837 kb on + strand, within CA264_12165 at 2836.881 kb on + strand, within CA264_12165 at 2837.115 kb on + strand, within CA264_12165 at 2837.116 kb on - strand, within CA264_12165 at 2837.145 kb on + strand, within CA264_12165 at 2837.145 kb on + strand, within CA264_12165 at 2837.146 kb on - strand, within CA264_12165 at 2837.146 kb on - strand, within CA264_12165 at 2837.175 kb on + strand, within CA264_12165 at 2837.194 kb on - strand, within CA264_12165 at 2837.240 kb on + strand, within CA264_12165 at 2837.339 kb on + strand, within CA264_12165 at 2837.423 kb on - strand, within CA264_12165 at 2837.423 kb on - strand, within CA264_12165 at 2837.424 kb on + strand, within CA264_12165 at 2837.425 kb on - strand, within CA264_12165 at 2837.428 kb on + strand, within CA264_12165 at 2837.529 kb on - strand, within CA264_12165 at 2837.614 kb on - strand at 2837.616 kb on - strand at 2837.628 kb on + strand at 2837.701 kb on + strand at 2837.732 kb on - strand at 2837.734 kb on + strand at 2837.783 kb on + strand at 2837.794 kb on + strand at 2837.794 kb on + strand at 2837.936 kb on + strand at 2837.936 kb on + strand at 2837.942 kb on + strand, within CA264_12170 at 2837.943 kb on - strand, within CA264_12170 at 2837.943 kb on - strand, within CA264_12170 at 2837.943 kb on - strand, within CA264_12170 at 2837.943 kb on - strand, within CA264_12170 at 2838.414 kb on + strand, within CA264_12170 at 2838.414 kb on + strand, within CA264_12170 at 2838.436 kb on - strand, within CA264_12170 at 2838.471 kb on - strand, within CA264_12170 at 2838.472 kb on + strand, within CA264_12170 at 2838.473 kb on - strand, within CA264_12170 at 2838.954 kb on - strand, within CA264_12175 at 2839.030 kb on - strand, within CA264_12175 at 2839.032 kb on - strand, within CA264_12175 at 2839.062 kb on + strand at 2839.194 kb on + strand at 2839.196 kb on + strand at 2839.197 kb on - strand at 2839.216 kb on + strand at 2839.275 kb on - strand at 2839.330 kb on + strand, within CA264_12180 at 2839.390 kb on - strand, within CA264_12180 at 2839.454 kb on + strand, within CA264_12180 at 2839.472 kb on + strand, within CA264_12180 at 2839.473 kb on - strand, within CA264_12180 at 2839.473 kb on - strand, within CA264_12180 at 2839.527 kb on - strand, within CA264_12180 at 2839.535 kb on + strand, within CA264_12180 at 2839.536 kb on - strand, within CA264_12180 at 2839.715 kb on - strand, within CA264_12180 at 2839.736 kb on - strand, within CA264_12180
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml remove 2,836,837 + CA264_12165 0.32 +0.3 2,836,837 + CA264_12165 0.32 +0.8 2,836,881 + CA264_12165 0.35 +0.2 2,837,115 + CA264_12165 0.53 -1.0 2,837,116 - CA264_12165 0.53 +0.6 2,837,145 + CA264_12165 0.55 -1.2 2,837,145 + CA264_12165 0.55 +0.3 2,837,146 - CA264_12165 0.55 +0.4 2,837,146 - CA264_12165 0.55 +0.5 2,837,175 + CA264_12165 0.57 +0.7 2,837,194 - CA264_12165 0.59 +0.2 2,837,240 + CA264_12165 0.62 +0.1 2,837,339 + CA264_12165 0.70 -0.2 2,837,423 - CA264_12165 0.76 -1.6 2,837,423 - CA264_12165 0.76 +0.2 2,837,424 + CA264_12165 0.76 +0.6 2,837,425 - CA264_12165 0.76 +0.2 2,837,428 + CA264_12165 0.77 -1.8 2,837,529 - CA264_12165 0.84 +0.2 2,837,614 - +0.2 2,837,616 - +0.2 2,837,628 + -0.7 2,837,701 + +2.1 2,837,732 - +0.8 2,837,734 + +0.7 2,837,783 + -0.4 2,837,794 + -0.2 2,837,794 + +0.7 2,837,936 + +0.2 2,837,936 + +0.4 2,837,942 + CA264_12170 0.10 +0.7 2,837,943 - CA264_12170 0.10 +0.3 2,837,943 - CA264_12170 0.10 +0.6 2,837,943 - CA264_12170 0.10 +0.0 2,837,943 - CA264_12170 0.10 -0.1 2,838,414 + CA264_12170 0.53 +0.7 2,838,414 + CA264_12170 0.53 -0.2 2,838,436 - CA264_12170 0.55 +0.4 2,838,471 - CA264_12170 0.58 +0.2 2,838,472 + CA264_12170 0.59 -0.4 2,838,473 - CA264_12170 0.59 -1.7 2,838,954 - CA264_12175 0.72 +0.5 2,839,030 - CA264_12175 0.86 +1.2 2,839,032 - CA264_12175 0.86 -0.0 2,839,062 + +1.1 2,839,194 + -0.3 2,839,196 + -0.4 2,839,197 - -0.7 2,839,216 + -0.4 2,839,275 - -0.5 2,839,330 + CA264_12180 0.14 -0.0 2,839,390 - CA264_12180 0.23 -1.9 2,839,454 + CA264_12180 0.32 -0.3 2,839,472 + CA264_12180 0.34 +0.2 2,839,473 - CA264_12180 0.35 -1.2 2,839,473 - CA264_12180 0.35 -0.2 2,839,527 - CA264_12180 0.42 -1.0 2,839,535 + CA264_12180 0.43 +1.1 2,839,536 - CA264_12180 0.44 -0.2 2,839,715 - CA264_12180 0.69 +0.7 2,839,736 - CA264_12180 0.72 +0.1
Or see this region's nucleotide sequence