Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_12075

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_12070 and CA264_12075 are separated by 284 nucleotidesCA264_12075 and CA264_12080 are separated by 3 nucleotidesCA264_12080 and CA264_12085 are separated by 3 nucleotidesCA264_12085 and CA264_12090 overlap by 4 nucleotides CA264_12070: CA264_12070 - tRNA dimethylallyltransferase, at 2,812,800 to 2,813,729 _12070 CA264_12075: CA264_12075 - PAS domain S-box protein, at 2,814,014 to 2,819,236 _12075 CA264_12080: CA264_12080 - response regulator, at 2,819,240 to 2,819,620 _12080 CA264_12085: CA264_12085 - hypothetical protein, at 2,819,624 to 2,819,899 _12085 CA264_12090: CA264_12090 - hydrolase, at 2,819,896 to 2,820,657 _12090 Position (kb) 2814 2815 2816 2817 2818 2819 2820Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2813.215 kb on - strand, within CA264_12070at 2813.326 kb on + strand, within CA264_12070at 2813.326 kb on + strand, within CA264_12070at 2813.327 kb on - strand, within CA264_12070at 2813.501 kb on - strand, within CA264_12070at 2813.501 kb on - strand, within CA264_12070at 2813.501 kb on - strand, within CA264_12070at 2813.517 kb on - strand, within CA264_12070at 2813.517 kb on - strand, within CA264_12070at 2813.754 kb on + strandat 2813.773 kb on - strandat 2814.003 kb on - strandat 2814.020 kb on + strandat 2814.020 kb on + strandat 2814.020 kb on + strandat 2814.021 kb on - strandat 2814.024 kb on + strandat 2814.025 kb on - strandat 2814.031 kb on + strandat 2814.031 kb on + strandat 2814.170 kb on + strandat 2814.281 kb on + strandat 2814.299 kb on + strandat 2814.300 kb on - strandat 2814.300 kb on - strandat 2814.326 kb on + strandat 2814.326 kb on + strandat 2814.327 kb on - strandat 2814.328 kb on + strandat 2814.329 kb on - strandat 2814.329 kb on - strandat 2814.329 kb on - strandat 2814.332 kb on + strandat 2814.332 kb on + strandat 2814.332 kb on + strandat 2814.434 kb on + strandat 2814.434 kb on + strandat 2814.466 kb on + strandat 2814.619 kb on - strand, within CA264_12075at 2814.619 kb on - strand, within CA264_12075at 2814.741 kb on - strand, within CA264_12075at 2814.927 kb on - strand, within CA264_12075at 2814.933 kb on - strand, within CA264_12075at 2814.933 kb on - strand, within CA264_12075at 2814.933 kb on - strand, within CA264_12075at 2815.009 kb on - strand, within CA264_12075at 2815.030 kb on - strand, within CA264_12075at 2815.042 kb on + strand, within CA264_12075at 2815.042 kb on + strand, within CA264_12075at 2815.042 kb on + strand, within CA264_12075at 2815.043 kb on - strand, within CA264_12075at 2815.043 kb on - strand, within CA264_12075at 2815.048 kb on + strand, within CA264_12075at 2815.048 kb on + strand, within CA264_12075at 2815.048 kb on + strand, within CA264_12075at 2815.096 kb on - strand, within CA264_12075at 2815.150 kb on + strand, within CA264_12075at 2815.152 kb on + strand, within CA264_12075at 2815.152 kb on + strand, within CA264_12075at 2815.153 kb on - strand, within CA264_12075at 2815.153 kb on - strand, within CA264_12075at 2815.235 kb on + strand, within CA264_12075at 2815.236 kb on - strand, within CA264_12075at 2815.287 kb on - strand, within CA264_12075at 2815.287 kb on - strand, within CA264_12075at 2815.287 kb on - strand, within CA264_12075at 2815.289 kb on - strand, within CA264_12075at 2815.289 kb on - strand, within CA264_12075at 2815.289 kb on - strand, within CA264_12075at 2815.289 kb on - strand, within CA264_12075at 2815.289 kb on - strand, within CA264_12075at 2815.310 kb on + strand, within CA264_12075at 2815.311 kb on - strand, within CA264_12075at 2815.311 kb on - strand, within CA264_12075at 2815.422 kb on - strand, within CA264_12075at 2815.599 kb on - strand, within CA264_12075at 2815.602 kb on + strand, within CA264_12075at 2815.602 kb on + strand, within CA264_12075at 2815.602 kb on + strand, within CA264_12075at 2815.724 kb on + strand, within CA264_12075at 2815.725 kb on - strand, within CA264_12075at 2815.725 kb on - strand, within CA264_12075at 2815.727 kb on + strand, within CA264_12075at 2815.728 kb on - strand, within CA264_12075at 2815.769 kb on + strand, within CA264_12075at 2815.769 kb on + strand, within CA264_12075at 2815.769 kb on + strand, within CA264_12075at 2815.770 kb on - strand, within CA264_12075at 2815.770 kb on - strand, within CA264_12075at 2815.770 kb on - strand, within CA264_12075at 2815.781 kb on + strand, within CA264_12075at 2815.782 kb on - strand, within CA264_12075at 2815.782 kb on - strand, within CA264_12075at 2815.782 kb on - strand, within CA264_12075at 2815.790 kb on + strand, within CA264_12075at 2815.908 kb on - strand, within CA264_12075at 2815.908 kb on - strand, within CA264_12075at 2815.908 kb on - strand, within CA264_12075at 2815.977 kb on - strand, within CA264_12075at 2816.188 kb on + strand, within CA264_12075at 2816.341 kb on + strand, within CA264_12075at 2816.342 kb on - strand, within CA264_12075at 2816.436 kb on + strand, within CA264_12075at 2816.438 kb on + strand, within CA264_12075at 2816.441 kb on + strand, within CA264_12075at 2816.441 kb on + strand, within CA264_12075at 2816.442 kb on - strand, within CA264_12075at 2816.593 kb on - strand, within CA264_12075at 2816.660 kb on + strand, within CA264_12075at 2816.664 kb on + strand, within CA264_12075at 2816.687 kb on + strand, within CA264_12075at 2816.688 kb on - strand, within CA264_12075at 2816.822 kb on + strand, within CA264_12075at 2816.872 kb on + strand, within CA264_12075at 2817.134 kb on + strand, within CA264_12075at 2817.134 kb on + strand, within CA264_12075at 2817.134 kb on + strand, within CA264_12075at 2817.135 kb on - strand, within CA264_12075at 2817.136 kb on + strand, within CA264_12075at 2817.137 kb on - strand, within CA264_12075at 2817.137 kb on - strand, within CA264_12075at 2817.186 kb on - strand, within CA264_12075at 2817.224 kb on + strand, within CA264_12075at 2817.262 kb on - strand, within CA264_12075at 2817.329 kb on - strand, within CA264_12075at 2817.356 kb on + strand, within CA264_12075at 2817.396 kb on + strand, within CA264_12075at 2817.406 kb on + strand, within CA264_12075at 2817.425 kb on + strand, within CA264_12075at 2817.467 kb on + strand, within CA264_12075at 2817.468 kb on - strand, within CA264_12075at 2817.468 kb on - strand, within CA264_12075at 2817.469 kb on + strand, within CA264_12075at 2817.470 kb on - strand, within CA264_12075at 2817.534 kb on + strand, within CA264_12075at 2817.601 kb on + strand, within CA264_12075at 2817.786 kb on + strand, within CA264_12075at 2817.787 kb on - strand, within CA264_12075at 2818.017 kb on - strand, within CA264_12075at 2818.105 kb on + strand, within CA264_12075at 2818.326 kb on + strand, within CA264_12075at 2818.461 kb on + strand, within CA264_12075at 2818.462 kb on - strand, within CA264_12075at 2818.462 kb on - strand, within CA264_12075at 2818.472 kb on - strand, within CA264_12075at 2818.475 kb on + strand, within CA264_12075at 2818.475 kb on + strand, within CA264_12075at 2818.476 kb on - strand, within CA264_12075at 2818.476 kb on - strand, within CA264_12075at 2818.476 kb on - strand, within CA264_12075at 2818.476 kb on - strand, within CA264_12075at 2818.476 kb on - strand, within CA264_12075at 2818.484 kb on + strand, within CA264_12075at 2818.484 kb on + strand, within CA264_12075at 2818.567 kb on - strand, within CA264_12075at 2818.567 kb on - strand, within CA264_12075at 2818.635 kb on + strand, within CA264_12075at 2818.635 kb on + strand, within CA264_12075at 2818.635 kb on + strand, within CA264_12075at 2818.636 kb on - strand, within CA264_12075at 2818.636 kb on - strand, within CA264_12075at 2818.778 kb on + strandat 2818.921 kb on - strandat 2818.954 kb on + strandat 2818.966 kb on - strandat 2819.028 kb on + strandat 2819.029 kb on - strandat 2819.037 kb on - strandat 2819.069 kb on - strandat 2819.095 kb on + strandat 2819.096 kb on - strandat 2819.125 kb on - strandat 2819.158 kb on + strandat 2819.160 kb on + strandat 2819.160 kb on + strandat 2819.160 kb on + strandat 2819.160 kb on + strandat 2819.161 kb on - strandat 2819.161 kb on - strandat 2819.224 kb on + strandat 2819.225 kb on - strandat 2819.226 kb on + strandat 2819.226 kb on + strandat 2819.534 kb on - strand, within CA264_12080at 2819.607 kb on - strandat 2819.609 kb on - strandat 2819.771 kb on + strand, within CA264_12085at 2819.772 kb on - strand, within CA264_12085at 2819.903 kb on + strandat 2819.903 kb on + strandat 2819.903 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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2,813,215 - CA264_12070 0.45 -1.6
2,813,326 + CA264_12070 0.57 -2.8
2,813,326 + CA264_12070 0.57 -2.5
2,813,327 - CA264_12070 0.57 -1.4
2,813,501 - CA264_12070 0.75 -2.6
2,813,501 - CA264_12070 0.75 -1.0
2,813,501 - CA264_12070 0.75 -1.8
2,813,517 - CA264_12070 0.77 -1.0
2,813,517 - CA264_12070 0.77 -2.0
2,813,754 + -2.7
2,813,773 - +0.2
2,814,003 - -0.3
2,814,020 + +1.4
2,814,020 + -0.2
2,814,020 + +0.6
2,814,021 - -0.6
2,814,024 + -1.2
2,814,025 - -0.3
2,814,031 + +0.8
2,814,031 + +0.3
2,814,170 + +0.2
2,814,281 + -0.6
2,814,299 + +0.2
2,814,300 - +0.1
2,814,300 - -0.1
2,814,326 + -0.6
2,814,326 + -1.4
2,814,327 - -0.3
2,814,328 + -0.0
2,814,329 - +0.6
2,814,329 - +1.5
2,814,329 - -0.4
2,814,332 + -0.7
2,814,332 + -0.1
2,814,332 + +0.2
2,814,434 + +0.7
2,814,434 + -0.0
2,814,466 + -0.0
2,814,619 - CA264_12075 0.12 -0.5
2,814,619 - CA264_12075 0.12 -0.3
2,814,741 - CA264_12075 0.14 -0.4
2,814,927 - CA264_12075 0.17 +0.3
2,814,933 - CA264_12075 0.18 -0.0
2,814,933 - CA264_12075 0.18 +1.4
2,814,933 - CA264_12075 0.18 +0.4
2,815,009 - CA264_12075 0.19 +0.2
2,815,030 - CA264_12075 0.19 -0.2
2,815,042 + CA264_12075 0.20 +0.5
2,815,042 + CA264_12075 0.20 +0.5
2,815,042 + CA264_12075 0.20 +0.5
2,815,043 - CA264_12075 0.20 +0.1
2,815,043 - CA264_12075 0.20 +1.0
2,815,048 + CA264_12075 0.20 -0.9
2,815,048 + CA264_12075 0.20 +0.5
2,815,048 + CA264_12075 0.20 -0.4
2,815,096 - CA264_12075 0.21 -0.3
2,815,150 + CA264_12075 0.22 +0.2
2,815,152 + CA264_12075 0.22 +0.6
2,815,152 + CA264_12075 0.22 +0.5
2,815,153 - CA264_12075 0.22 -0.7
2,815,153 - CA264_12075 0.22 +0.1
2,815,235 + CA264_12075 0.23 +0.4
2,815,236 - CA264_12075 0.23 +0.4
2,815,287 - CA264_12075 0.24 +0.4
2,815,287 - CA264_12075 0.24 +1.8
2,815,287 - CA264_12075 0.24 +0.3
2,815,289 - CA264_12075 0.24 +0.3
2,815,289 - CA264_12075 0.24 -0.3
2,815,289 - CA264_12075 0.24 +0.3
2,815,289 - CA264_12075 0.24 +0.6
2,815,289 - CA264_12075 0.24 +1.2
2,815,310 + CA264_12075 0.25 +0.5
2,815,311 - CA264_12075 0.25 -0.6
2,815,311 - CA264_12075 0.25 +0.0
2,815,422 - CA264_12075 0.27 +0.2
2,815,599 - CA264_12075 0.30 -0.4
2,815,602 + CA264_12075 0.30 -1.8
2,815,602 + CA264_12075 0.30 +0.2
2,815,602 + CA264_12075 0.30 -0.9
2,815,724 + CA264_12075 0.33 -0.4
2,815,725 - CA264_12075 0.33 -0.4
2,815,725 - CA264_12075 0.33 +0.4
2,815,727 + CA264_12075 0.33 -0.6
2,815,728 - CA264_12075 0.33 +0.3
2,815,769 + CA264_12075 0.34 -0.6
2,815,769 + CA264_12075 0.34 +0.3
2,815,769 + CA264_12075 0.34 -0.9
2,815,770 - CA264_12075 0.34 +0.8
2,815,770 - CA264_12075 0.34 +1.0
2,815,770 - CA264_12075 0.34 +0.4
2,815,781 + CA264_12075 0.34 -0.2
2,815,782 - CA264_12075 0.34 +0.1
2,815,782 - CA264_12075 0.34 +1.0
2,815,782 - CA264_12075 0.34 +0.2
2,815,790 + CA264_12075 0.34 -0.7
2,815,908 - CA264_12075 0.36 +1.8
2,815,908 - CA264_12075 0.36 -0.3
2,815,908 - CA264_12075 0.36 +0.9
2,815,977 - CA264_12075 0.38 +0.6
2,816,188 + CA264_12075 0.42 -1.9
2,816,341 + CA264_12075 0.45 -2.4
2,816,342 - CA264_12075 0.45 -0.6
2,816,436 + CA264_12075 0.46 -2.0
2,816,438 + CA264_12075 0.46 -3.6
2,816,441 + CA264_12075 0.46 -0.8
2,816,441 + CA264_12075 0.46 -2.4
2,816,442 - CA264_12075 0.46 -0.3
2,816,593 - CA264_12075 0.49 -1.7
2,816,660 + CA264_12075 0.51 -1.6
2,816,664 + CA264_12075 0.51 -2.8
2,816,687 + CA264_12075 0.51 -0.9
2,816,688 - CA264_12075 0.51 +1.2
2,816,822 + CA264_12075 0.54 +0.2
2,816,872 + CA264_12075 0.55 +0.8
2,817,134 + CA264_12075 0.60 -1.2
2,817,134 + CA264_12075 0.60 +1.9
2,817,134 + CA264_12075 0.60 -0.2
2,817,135 - CA264_12075 0.60 -0.5
2,817,136 + CA264_12075 0.60 +0.3
2,817,137 - CA264_12075 0.60 -0.7
2,817,137 - CA264_12075 0.60 +1.0
2,817,186 - CA264_12075 0.61 -0.9
2,817,224 + CA264_12075 0.61 -0.3
2,817,262 - CA264_12075 0.62 +1.4
2,817,329 - CA264_12075 0.63 +0.2
2,817,356 + CA264_12075 0.64 -1.5
2,817,396 + CA264_12075 0.65 -0.4
2,817,406 + CA264_12075 0.65 -0.9
2,817,425 + CA264_12075 0.65 +0.5
2,817,467 + CA264_12075 0.66 +0.1
2,817,468 - CA264_12075 0.66 -0.0
2,817,468 - CA264_12075 0.66 -1.2
2,817,469 + CA264_12075 0.66 -0.3
2,817,470 - CA264_12075 0.66 +1.9
2,817,534 + CA264_12075 0.67 -0.3
2,817,601 + CA264_12075 0.69 +0.1
2,817,786 + CA264_12075 0.72 +1.1
2,817,787 - CA264_12075 0.72 +0.2
2,818,017 - CA264_12075 0.77 -0.0
2,818,105 + CA264_12075 0.78 +0.7
2,818,326 + CA264_12075 0.83 +0.3
2,818,461 + CA264_12075 0.85 +0.8
2,818,462 - CA264_12075 0.85 +1.1
2,818,462 - CA264_12075 0.85 +0.9
2,818,472 - CA264_12075 0.85 -1.6
2,818,475 + CA264_12075 0.85 -0.6
2,818,475 + CA264_12075 0.85 -0.0
2,818,476 - CA264_12075 0.85 -0.1
2,818,476 - CA264_12075 0.85 +0.6
2,818,476 - CA264_12075 0.85 -0.1
2,818,476 - CA264_12075 0.85 -0.0
2,818,476 - CA264_12075 0.85 +1.4
2,818,484 + CA264_12075 0.86 -0.0
2,818,484 + CA264_12075 0.86 -0.4
2,818,567 - CA264_12075 0.87 -0.7
2,818,567 - CA264_12075 0.87 +0.1
2,818,635 + CA264_12075 0.88 +1.2
2,818,635 + CA264_12075 0.88 +1.1
2,818,635 + CA264_12075 0.88 +1.8
2,818,636 - CA264_12075 0.88 +0.2
2,818,636 - CA264_12075 0.88 +0.9
2,818,778 + +0.3
2,818,921 - -0.8
2,818,954 + -0.7
2,818,966 - -0.3
2,819,028 + +0.0
2,819,029 - +0.0
2,819,037 - -1.6
2,819,069 - +0.5
2,819,095 + +0.2
2,819,096 - -0.0
2,819,125 - -0.0
2,819,158 + +1.2
2,819,160 + +0.1
2,819,160 + +0.3
2,819,160 + -0.2
2,819,160 + +0.7
2,819,161 - +0.1
2,819,161 - -0.1
2,819,224 + -0.9
2,819,225 - -0.9
2,819,226 + -0.5
2,819,226 + -0.5
2,819,534 - CA264_12080 0.77 -1.3
2,819,607 - -2.1
2,819,609 - -1.5
2,819,771 + CA264_12085 0.53 -2.0
2,819,772 - CA264_12085 0.54 -1.6
2,819,903 + -0.9
2,819,903 + -1.2
2,819,903 + -0.2

Or see this region's nucleotide sequence