Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_10940

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_10930 and CA264_10935 are separated by 243 nucleotidesCA264_10935 and CA264_10940 are separated by 73 nucleotidesCA264_10940 and CA264_10945 are separated by 109 nucleotidesCA264_10945 and CA264_10950 overlap by 1 nucleotides CA264_10930: CA264_10930 - methylglutaconyl-CoA hydratase, at 2,522,799 to 2,523,608 _10930 CA264_10935: CA264_10935 - TetR family transcriptional regulator, at 2,523,852 to 2,524,472 _10935 CA264_10940: CA264_10940 - phenylacetate-CoA oxygenase subunit PaaA, at 2,524,546 to 2,525,532 _10940 CA264_10945: CA264_10945 - phenylacetic acid degradation b, at 2,525,642 to 2,526,277 _10945 CA264_10950: CA264_10950 - phenylacetate-CoA oxygenase subunit PaaI, at 2,526,277 to 2,527,032 _10950 Position (kb) 2524 2525 2526Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2523.580 kb on - strandat 2523.580 kb on - strandat 2523.612 kb on + strandat 2523.627 kb on - strandat 2523.658 kb on - strandat 2523.666 kb on - strandat 2523.667 kb on + strandat 2523.668 kb on - strandat 2523.852 kb on - strandat 2523.852 kb on - strandat 2523.884 kb on - strandat 2523.964 kb on + strand, within CA264_10935at 2524.029 kb on - strand, within CA264_10935at 2524.206 kb on + strand, within CA264_10935at 2524.227 kb on + strand, within CA264_10935at 2524.228 kb on - strand, within CA264_10935at 2524.228 kb on - strand, within CA264_10935at 2524.347 kb on + strand, within CA264_10935at 2524.347 kb on + strand, within CA264_10935at 2524.348 kb on - strand, within CA264_10935at 2524.350 kb on - strand, within CA264_10935at 2524.408 kb on + strand, within CA264_10935at 2524.409 kb on - strand, within CA264_10935at 2524.445 kb on + strandat 2524.460 kb on + strandat 2524.460 kb on + strandat 2524.463 kb on + strandat 2524.463 kb on + strandat 2524.470 kb on + strandat 2524.475 kb on - strandat 2524.531 kb on - strandat 2524.540 kb on + strandat 2524.540 kb on + strandat 2524.540 kb on + strandat 2524.540 kb on + strandat 2524.541 kb on - strandat 2524.541 kb on - strandat 2524.541 kb on - strandat 2524.541 kb on - strandat 2524.541 kb on - strandat 2524.541 kb on - strandat 2524.541 kb on - strandat 2524.542 kb on + strandat 2524.542 kb on + strandat 2524.542 kb on + strandat 2524.543 kb on - strandat 2524.543 kb on - strandat 2524.543 kb on - strandat 2524.543 kb on - strandat 2524.543 kb on - strandat 2524.545 kb on + strandat 2524.545 kb on + strandat 2524.545 kb on + strandat 2524.545 kb on + strandat 2524.546 kb on - strandat 2524.546 kb on - strandat 2524.546 kb on - strandat 2524.546 kb on - strandat 2524.550 kb on - strandat 2524.824 kb on - strand, within CA264_10940at 2524.915 kb on + strand, within CA264_10940at 2524.929 kb on + strand, within CA264_10940at 2524.929 kb on + strand, within CA264_10940at 2524.944 kb on + strand, within CA264_10940at 2524.944 kb on + strand, within CA264_10940at 2524.944 kb on + strand, within CA264_10940at 2525.087 kb on - strand, within CA264_10940at 2525.145 kb on - strand, within CA264_10940at 2525.256 kb on + strand, within CA264_10940at 2525.290 kb on + strand, within CA264_10940at 2525.290 kb on + strand, within CA264_10940at 2525.290 kb on + strand, within CA264_10940at 2525.291 kb on - strand, within CA264_10940at 2525.291 kb on - strand, within CA264_10940at 2525.291 kb on - strand, within CA264_10940at 2525.291 kb on - strand, within CA264_10940at 2525.372 kb on - strand, within CA264_10940at 2525.540 kb on + strandat 2525.561 kb on + strandat 2525.596 kb on - strandat 2525.629 kb on + strandat 2525.634 kb on - strandat 2525.744 kb on + strand, within CA264_10945at 2525.744 kb on + strand, within CA264_10945at 2525.782 kb on + strand, within CA264_10945at 2525.782 kb on + strand, within CA264_10945at 2525.783 kb on - strand, within CA264_10945at 2525.786 kb on + strand, within CA264_10945at 2525.786 kb on + strand, within CA264_10945at 2525.786 kb on + strand, within CA264_10945at 2525.786 kb on + strand, within CA264_10945at 2525.787 kb on - strand, within CA264_10945at 2525.787 kb on - strand, within CA264_10945at 2525.937 kb on - strand, within CA264_10945at 2525.937 kb on - strand, within CA264_10945at 2526.028 kb on + strand, within CA264_10945at 2526.029 kb on - strand, within CA264_10945at 2526.060 kb on - strand, within CA264_10945at 2526.130 kb on - strand, within CA264_10945at 2526.218 kb on + strandat 2526.218 kb on + strandat 2526.218 kb on + strandat 2526.218 kb on + strandat 2526.218 kb on + strandat 2526.219 kb on - strandat 2526.220 kb on + strandat 2526.220 kb on + strandat 2526.247 kb on + strandat 2526.275 kb on + strandat 2526.307 kb on + strandat 2526.330 kb on + strandat 2526.331 kb on - strandat 2526.331 kb on - strandat 2526.332 kb on + strandat 2526.439 kb on + strand, within CA264_10950at 2526.439 kb on + strand, within CA264_10950at 2526.528 kb on - strand, within CA264_10950

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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2,523,580 - -1.5
2,523,580 - -1.1
2,523,612 + -1.7
2,523,627 - -2.9
2,523,658 - -0.7
2,523,666 - -2.1
2,523,667 + -2.8
2,523,668 - -1.4
2,523,852 - -0.3
2,523,852 - -2.2
2,523,884 - -1.3
2,523,964 + CA264_10935 0.18 -1.9
2,524,029 - CA264_10935 0.29 -1.3
2,524,206 + CA264_10935 0.57 -1.8
2,524,227 + CA264_10935 0.60 -1.6
2,524,228 - CA264_10935 0.61 -0.6
2,524,228 - CA264_10935 0.61 -1.0
2,524,347 + CA264_10935 0.80 +2.0
2,524,347 + CA264_10935 0.80 -1.0
2,524,348 - CA264_10935 0.80 -3.4
2,524,350 - CA264_10935 0.80 -1.2
2,524,408 + CA264_10935 0.90 -0.9
2,524,409 - CA264_10935 0.90 -0.6
2,524,445 + -0.6
2,524,460 + -0.8
2,524,460 + -0.3
2,524,463 + -0.5
2,524,463 + -0.8
2,524,470 + -1.0
2,524,475 - -1.1
2,524,531 - +1.1
2,524,540 + -0.4
2,524,540 + -0.8
2,524,540 + -1.2
2,524,540 + +0.5
2,524,541 - +0.2
2,524,541 - +0.4
2,524,541 - -1.5
2,524,541 - -0.3
2,524,541 - -0.2
2,524,541 - -0.1
2,524,541 - +0.6
2,524,542 + -0.5
2,524,542 + +1.2
2,524,542 + -1.0
2,524,543 - -0.8
2,524,543 - -0.8
2,524,543 - -1.8
2,524,543 - -1.0
2,524,543 - -1.0
2,524,545 + -0.7
2,524,545 + -1.2
2,524,545 + +0.6
2,524,545 + -0.9
2,524,546 - -0.9
2,524,546 - -1.2
2,524,546 - -3.0
2,524,546 - -0.5
2,524,550 - -0.7
2,524,824 - CA264_10940 0.28 -0.4
2,524,915 + CA264_10940 0.37 +0.6
2,524,929 + CA264_10940 0.39 -0.5
2,524,929 + CA264_10940 0.39 +0.5
2,524,944 + CA264_10940 0.40 -0.9
2,524,944 + CA264_10940 0.40 +0.2
2,524,944 + CA264_10940 0.40 -0.0
2,525,087 - CA264_10940 0.55 -0.2
2,525,145 - CA264_10940 0.61 +0.1
2,525,256 + CA264_10940 0.72 -1.7
2,525,290 + CA264_10940 0.75 -0.2
2,525,290 + CA264_10940 0.75 -0.6
2,525,290 + CA264_10940 0.75 +0.7
2,525,291 - CA264_10940 0.75 +0.5
2,525,291 - CA264_10940 0.75 +0.3
2,525,291 - CA264_10940 0.75 +0.7
2,525,291 - CA264_10940 0.75 -0.4
2,525,372 - CA264_10940 0.84 +0.6
2,525,540 + -0.2
2,525,561 + -0.5
2,525,596 - -0.7
2,525,629 + +0.2
2,525,634 - -0.1
2,525,744 + CA264_10945 0.16 -0.8
2,525,744 + CA264_10945 0.16 -2.4
2,525,782 + CA264_10945 0.22 +0.7
2,525,782 + CA264_10945 0.22 +0.1
2,525,783 - CA264_10945 0.22 +0.1
2,525,786 + CA264_10945 0.23 +1.4
2,525,786 + CA264_10945 0.23 -1.5
2,525,786 + CA264_10945 0.23 +1.2
2,525,786 + CA264_10945 0.23 -0.2
2,525,787 - CA264_10945 0.23 -0.8
2,525,787 - CA264_10945 0.23 +0.0
2,525,937 - CA264_10945 0.46 +0.9
2,525,937 - CA264_10945 0.46 +0.2
2,526,028 + CA264_10945 0.61 -0.1
2,526,029 - CA264_10945 0.61 +0.8
2,526,060 - CA264_10945 0.66 +0.9
2,526,130 - CA264_10945 0.77 -0.7
2,526,218 + -0.3
2,526,218 + -0.3
2,526,218 + -0.6
2,526,218 + -0.9
2,526,218 + +0.5
2,526,219 - +1.2
2,526,220 + -0.0
2,526,220 + +0.1
2,526,247 + -0.2
2,526,275 + +0.0
2,526,307 + -0.7
2,526,330 + +0.4
2,526,331 - -0.4
2,526,331 - -0.8
2,526,332 + -0.3
2,526,439 + CA264_10950 0.21 +0.8
2,526,439 + CA264_10950 0.21 -0.9
2,526,528 - CA264_10950 0.33 -0.5

Or see this region's nucleotide sequence