Experiment: m.b. D-Cycloserine 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_10335 and CA264_10340 are separated by 715 nucleotides CA264_10340 and CA264_10345 overlap by 32 nucleotides CA264_10345 and CA264_10350 are separated by 193 nucleotides
CA264_10335: CA264_10335 - conjugal transfer protein TraG, at 2,401,452 to 2,403,434
_10335
CA264_10340: CA264_10340 - recombinase family protein, at 2,404,150 to 2,405,688
_10340
CA264_10345: CA264_10345 - tRNA-Arg, at 2,405,657 to 2,405,733
_10345
CA264_10350: CA264_10350 - hypothetical protein, at 2,405,927 to 2,407,333
_10350
Position (kb)
2404
2405
2406 Strain fitness (log2 ratio)
-2
-1
0
1 at 2403.282 kb on + strand at 2403.325 kb on + strand at 2403.432 kb on + strand at 2403.493 kb on - strand at 2403.527 kb on + strand at 2403.528 kb on - strand at 2403.547 kb on + strand at 2403.550 kb on + strand at 2403.551 kb on - strand at 2403.567 kb on - strand at 2403.579 kb on - strand at 2403.656 kb on + strand at 2403.657 kb on - strand at 2403.687 kb on + strand at 2403.690 kb on + strand at 2403.695 kb on + strand at 2403.700 kb on + strand at 2403.701 kb on - strand at 2403.701 kb on - strand at 2403.826 kb on - strand at 2403.833 kb on - strand at 2403.902 kb on + strand at 2403.903 kb on - strand at 2403.932 kb on + strand at 2403.933 kb on - strand at 2403.947 kb on - strand at 2403.965 kb on - strand at 2404.028 kb on - strand at 2404.064 kb on - strand at 2404.125 kb on + strand at 2404.125 kb on + strand at 2404.130 kb on - strand at 2404.134 kb on - strand at 2404.167 kb on - strand at 2404.168 kb on + strand at 2404.383 kb on + strand, within CA264_10340 at 2404.431 kb on + strand, within CA264_10340 at 2404.504 kb on - strand, within CA264_10340 at 2404.523 kb on - strand, within CA264_10340 at 2404.630 kb on + strand, within CA264_10340 at 2404.631 kb on - strand, within CA264_10340 at 2404.643 kb on + strand, within CA264_10340 at 2404.660 kb on - strand, within CA264_10340 at 2404.663 kb on + strand, within CA264_10340 at 2404.776 kb on + strand, within CA264_10340 at 2404.845 kb on + strand, within CA264_10340 at 2404.849 kb on + strand, within CA264_10340 at 2404.849 kb on + strand, within CA264_10340 at 2404.851 kb on + strand, within CA264_10340 at 2404.851 kb on + strand, within CA264_10340 at 2404.851 kb on + strand, within CA264_10340 at 2404.875 kb on - strand, within CA264_10340 at 2405.000 kb on - strand, within CA264_10340 at 2405.063 kb on - strand, within CA264_10340 at 2405.066 kb on - strand, within CA264_10340 at 2405.071 kb on + strand, within CA264_10340 at 2405.074 kb on + strand, within CA264_10340 at 2405.075 kb on - strand, within CA264_10340 at 2405.075 kb on - strand, within CA264_10340 at 2405.153 kb on - strand, within CA264_10340 at 2405.153 kb on - strand, within CA264_10340 at 2405.153 kb on - strand, within CA264_10340 at 2405.153 kb on - strand, within CA264_10340 at 2405.182 kb on + strand, within CA264_10340 at 2405.182 kb on + strand, within CA264_10340 at 2405.183 kb on - strand, within CA264_10340 at 2405.183 kb on - strand, within CA264_10340 at 2405.220 kb on + strand, within CA264_10340 at 2405.607 kb on - strand at 2405.757 kb on + strand at 2405.758 kb on - strand at 2405.807 kb on + strand at 2405.835 kb on - strand at 2405.849 kb on + strand at 2405.850 kb on - strand at 2405.851 kb on + strand at 2405.854 kb on + strand at 2405.855 kb on - strand at 2405.855 kb on - strand at 2405.924 kb on + strand at 2405.924 kb on + strand at 2405.925 kb on - strand at 2405.926 kb on + strand at 2405.927 kb on - strand at 2405.991 kb on - strand at 2405.991 kb on - strand at 2406.000 kb on - strand at 2406.039 kb on + strand at 2406.040 kb on - strand at 2406.042 kb on + strand at 2406.043 kb on - strand at 2406.045 kb on + strand at 2406.058 kb on - strand at 2406.058 kb on - strand at 2406.064 kb on + strand at 2406.065 kb on - strand at 2406.067 kb on + strand at 2406.067 kb on + strand at 2406.068 kb on - strand, within CA264_10350 at 2406.121 kb on + strand, within CA264_10350 at 2406.139 kb on + strand, within CA264_10350 at 2406.190 kb on + strand, within CA264_10350 at 2406.214 kb on - strand, within CA264_10350 at 2406.227 kb on - strand, within CA264_10350 at 2406.227 kb on - strand, within CA264_10350 at 2406.255 kb on + strand, within CA264_10350 at 2406.259 kb on + strand, within CA264_10350 at 2406.259 kb on + strand, within CA264_10350 at 2406.260 kb on - strand, within CA264_10350 at 2406.260 kb on - strand, within CA264_10350 at 2406.313 kb on + strand, within CA264_10350 at 2406.327 kb on + strand, within CA264_10350 at 2406.359 kb on + strand, within CA264_10350 at 2406.360 kb on - strand, within CA264_10350 at 2406.360 kb on - strand, within CA264_10350 at 2406.414 kb on + strand, within CA264_10350 at 2406.418 kb on - strand, within CA264_10350 at 2406.426 kb on - strand, within CA264_10350 at 2406.430 kb on + strand, within CA264_10350 at 2406.431 kb on - strand, within CA264_10350 at 2406.431 kb on - strand, within CA264_10350 at 2406.431 kb on - strand, within CA264_10350 at 2406.464 kb on - strand, within CA264_10350 at 2406.517 kb on + strand, within CA264_10350 at 2406.518 kb on - strand, within CA264_10350 at 2406.573 kb on - strand, within CA264_10350 at 2406.576 kb on + strand, within CA264_10350 at 2406.577 kb on - strand, within CA264_10350 at 2406.577 kb on - strand, within CA264_10350 at 2406.581 kb on + strand, within CA264_10350 at 2406.596 kb on - strand, within CA264_10350 at 2406.599 kb on + strand, within CA264_10350 at 2406.600 kb on - strand, within CA264_10350 at 2406.603 kb on - strand, within CA264_10350 at 2406.676 kb on - strand, within CA264_10350
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml remove 2,403,282 + -0.2 2,403,325 + +0.1 2,403,432 + +0.1 2,403,493 - -1.5 2,403,527 + -0.1 2,403,528 - -0.9 2,403,547 + -0.8 2,403,550 + +0.6 2,403,551 - -1.9 2,403,567 - +1.7 2,403,579 - -0.5 2,403,656 + -0.8 2,403,657 - -0.2 2,403,687 + -1.6 2,403,690 + -0.4 2,403,695 + +0.2 2,403,700 + +0.7 2,403,701 - +0.8 2,403,701 - +0.2 2,403,826 - -0.6 2,403,833 - +0.4 2,403,902 + -1.1 2,403,903 - +0.4 2,403,932 + -0.8 2,403,933 - -0.2 2,403,947 - -0.1 2,403,965 - +0.5 2,404,028 - +0.3 2,404,064 - -2.2 2,404,125 + -0.4 2,404,125 + +0.2 2,404,130 - +0.3 2,404,134 - -0.6 2,404,167 - -0.8 2,404,168 + -0.3 2,404,383 + CA264_10340 0.15 -0.5 2,404,431 + CA264_10340 0.18 +0.8 2,404,504 - CA264_10340 0.23 -0.6 2,404,523 - CA264_10340 0.24 +1.0 2,404,630 + CA264_10340 0.31 -0.1 2,404,631 - CA264_10340 0.31 -1.2 2,404,643 + CA264_10340 0.32 -0.2 2,404,660 - CA264_10340 0.33 +0.5 2,404,663 + CA264_10340 0.33 -0.3 2,404,776 + CA264_10340 0.41 +0.0 2,404,845 + CA264_10340 0.45 -1.4 2,404,849 + CA264_10340 0.45 -1.4 2,404,849 + CA264_10340 0.45 -0.1 2,404,851 + CA264_10340 0.46 +0.7 2,404,851 + CA264_10340 0.46 -0.7 2,404,851 + CA264_10340 0.46 -1.7 2,404,875 - CA264_10340 0.47 -1.0 2,405,000 - CA264_10340 0.55 -0.5 2,405,063 - CA264_10340 0.59 -1.3 2,405,066 - CA264_10340 0.60 +0.7 2,405,071 + CA264_10340 0.60 -0.0 2,405,074 + CA264_10340 0.60 +0.3 2,405,075 - CA264_10340 0.60 +0.4 2,405,075 - CA264_10340 0.60 -1.1 2,405,153 - CA264_10340 0.65 -0.5 2,405,153 - CA264_10340 0.65 -0.4 2,405,153 - CA264_10340 0.65 -0.5 2,405,153 - CA264_10340 0.65 -1.2 2,405,182 + CA264_10340 0.67 -0.8 2,405,182 + CA264_10340 0.67 +0.3 2,405,183 - CA264_10340 0.67 -0.4 2,405,183 - CA264_10340 0.67 -0.2 2,405,220 + CA264_10340 0.70 +1.7 2,405,607 - -0.6 2,405,757 + -0.2 2,405,758 - -1.9 2,405,807 + -0.0 2,405,835 - -1.1 2,405,849 + -0.0 2,405,850 - -2.1 2,405,851 + -0.3 2,405,854 + -1.0 2,405,855 - -0.2 2,405,855 - +0.2 2,405,924 + -0.8 2,405,924 + +0.3 2,405,925 - +0.2 2,405,926 + +0.2 2,405,927 - -0.4 2,405,991 - +0.2 2,405,991 - -0.2 2,406,000 - +1.5 2,406,039 + -0.1 2,406,040 - +0.2 2,406,042 + -0.5 2,406,043 - -0.2 2,406,045 + +1.0 2,406,058 - -0.7 2,406,058 - -0.8 2,406,064 + +1.1 2,406,065 - +0.2 2,406,067 + +1.4 2,406,067 + -1.9 2,406,068 - CA264_10350 0.10 -0.5 2,406,121 + CA264_10350 0.14 -0.4 2,406,139 + CA264_10350 0.15 -0.4 2,406,190 + CA264_10350 0.19 +0.5 2,406,214 - CA264_10350 0.20 -0.7 2,406,227 - CA264_10350 0.21 -0.5 2,406,227 - CA264_10350 0.21 -0.4 2,406,255 + CA264_10350 0.23 +1.2 2,406,259 + CA264_10350 0.24 -0.7 2,406,259 + CA264_10350 0.24 -1.3 2,406,260 - CA264_10350 0.24 -0.0 2,406,260 - CA264_10350 0.24 -0.1 2,406,313 + CA264_10350 0.27 +1.4 2,406,327 + CA264_10350 0.28 +0.8 2,406,359 + CA264_10350 0.31 +1.1 2,406,360 - CA264_10350 0.31 -0.2 2,406,360 - CA264_10350 0.31 +0.0 2,406,414 + CA264_10350 0.35 +0.9 2,406,418 - CA264_10350 0.35 -0.1 2,406,426 - CA264_10350 0.35 +0.1 2,406,430 + CA264_10350 0.36 -0.5 2,406,431 - CA264_10350 0.36 -0.7 2,406,431 - CA264_10350 0.36 -0.2 2,406,431 - CA264_10350 0.36 -0.5 2,406,464 - CA264_10350 0.38 -0.3 2,406,517 + CA264_10350 0.42 -0.4 2,406,518 - CA264_10350 0.42 +0.0 2,406,573 - CA264_10350 0.46 -1.6 2,406,576 + CA264_10350 0.46 -1.1 2,406,577 - CA264_10350 0.46 +0.1 2,406,577 - CA264_10350 0.46 -0.4 2,406,581 + CA264_10350 0.46 -0.1 2,406,596 - CA264_10350 0.48 +0.4 2,406,599 + CA264_10350 0.48 -0.8 2,406,600 - CA264_10350 0.48 -0.4 2,406,603 - CA264_10350 0.48 -0.3 2,406,676 - CA264_10350 0.53 -0.1
Or see this region's nucleotide sequence