Experiment: m.b. D-Cycloserine 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_08970 and CA264_08975 are separated by 137 nucleotides CA264_08975 and CA264_08980 are separated by 120 nucleotides CA264_08980 and CA264_08985 are separated by 3 nucleotides
CA264_08970: CA264_08970 - glycoside hydrolase family 15, at 2,094,520 to 2,096,244
_08970
CA264_08975: CA264_08975 - hypothetical protein, at 2,096,382 to 2,097,305
_08975
CA264_08980: CA264_08980 - hypothetical protein, at 2,097,426 to 2,097,794
_08980
CA264_08985: CA264_08985 - glycosyl transferase family 2, at 2,097,798 to 2,099,267
_08985
Position (kb)
2096
2097
2098 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2095.502 kb on + strand, within CA264_08970 at 2095.502 kb on + strand, within CA264_08970 at 2095.554 kb on + strand, within CA264_08970 at 2095.634 kb on + strand, within CA264_08970 at 2095.710 kb on + strand, within CA264_08970 at 2095.828 kb on + strand, within CA264_08970 at 2095.829 kb on - strand, within CA264_08970 at 2095.834 kb on + strand, within CA264_08970 at 2095.898 kb on - strand, within CA264_08970 at 2095.970 kb on + strand, within CA264_08970 at 2095.970 kb on + strand, within CA264_08970 at 2095.970 kb on + strand, within CA264_08970 at 2095.970 kb on + strand, within CA264_08970 at 2095.970 kb on + strand, within CA264_08970 at 2096.151 kb on - strand at 2096.158 kb on + strand at 2096.178 kb on + strand at 2096.178 kb on + strand at 2096.181 kb on - strand at 2096.181 kb on - strand at 2096.250 kb on - strand at 2096.285 kb on - strand at 2096.287 kb on - strand at 2096.287 kb on - strand at 2096.325 kb on + strand at 2096.374 kb on + strand at 2096.383 kb on + strand at 2096.384 kb on - strand at 2096.394 kb on + strand at 2096.509 kb on - strand, within CA264_08975 at 2096.583 kb on - strand, within CA264_08975 at 2096.584 kb on + strand, within CA264_08975 at 2096.850 kb on - strand, within CA264_08975 at 2096.852 kb on - strand, within CA264_08975 at 2096.937 kb on - strand, within CA264_08975 at 2096.941 kb on + strand, within CA264_08975 at 2096.941 kb on + strand, within CA264_08975 at 2096.941 kb on + strand, within CA264_08975 at 2096.951 kb on + strand, within CA264_08975 at 2096.974 kb on + strand, within CA264_08975 at 2096.974 kb on + strand, within CA264_08975 at 2096.981 kb on - strand, within CA264_08975 at 2097.096 kb on + strand, within CA264_08975 at 2097.158 kb on - strand, within CA264_08975 at 2097.158 kb on - strand, within CA264_08975 at 2097.184 kb on + strand, within CA264_08975 at 2097.191 kb on - strand, within CA264_08975 at 2097.214 kb on - strand at 2097.364 kb on + strand at 2097.430 kb on - strand at 2097.489 kb on + strand, within CA264_08980 at 2097.525 kb on + strand, within CA264_08980 at 2097.526 kb on - strand, within CA264_08980 at 2097.526 kb on - strand, within CA264_08980 at 2097.637 kb on + strand, within CA264_08980 at 2097.638 kb on - strand, within CA264_08980 at 2097.673 kb on + strand, within CA264_08980 at 2097.674 kb on - strand, within CA264_08980 at 2097.700 kb on + strand, within CA264_08980 at 2097.700 kb on + strand, within CA264_08980 at 2097.781 kb on - strand at 2097.801 kb on + strand at 2097.801 kb on + strand at 2097.801 kb on - strand at 2097.820 kb on + strand at 2097.959 kb on - strand, within CA264_08985 at 2098.192 kb on + strand, within CA264_08985
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml remove 2,095,502 + CA264_08970 0.57 +0.4 2,095,502 + CA264_08970 0.57 -1.2 2,095,554 + CA264_08970 0.60 +1.4 2,095,634 + CA264_08970 0.65 +0.1 2,095,710 + CA264_08970 0.69 -0.9 2,095,828 + CA264_08970 0.76 -0.3 2,095,829 - CA264_08970 0.76 +0.4 2,095,834 + CA264_08970 0.76 -0.5 2,095,898 - CA264_08970 0.80 -0.4 2,095,970 + CA264_08970 0.84 -0.4 2,095,970 + CA264_08970 0.84 +0.4 2,095,970 + CA264_08970 0.84 +0.8 2,095,970 + CA264_08970 0.84 -0.2 2,095,970 + CA264_08970 0.84 +0.1 2,096,151 - -0.7 2,096,158 + +0.6 2,096,178 + -0.4 2,096,178 + +0.3 2,096,181 - -1.7 2,096,181 - -0.2 2,096,250 - -0.3 2,096,285 - +0.0 2,096,287 - -0.7 2,096,287 - -0.3 2,096,325 + +1.8 2,096,374 + -0.5 2,096,383 + +0.0 2,096,384 - +0.7 2,096,394 + -0.0 2,096,509 - CA264_08975 0.14 -0.1 2,096,583 - CA264_08975 0.22 -0.8 2,096,584 + CA264_08975 0.22 -0.3 2,096,850 - CA264_08975 0.51 +0.7 2,096,852 - CA264_08975 0.51 +0.3 2,096,937 - CA264_08975 0.60 +0.2 2,096,941 + CA264_08975 0.60 -1.4 2,096,941 + CA264_08975 0.60 +2.7 2,096,941 + CA264_08975 0.60 +0.2 2,096,951 + CA264_08975 0.62 -0.2 2,096,974 + CA264_08975 0.64 -2.3 2,096,974 + CA264_08975 0.64 +0.3 2,096,981 - CA264_08975 0.65 +1.2 2,097,096 + CA264_08975 0.77 +0.0 2,097,158 - CA264_08975 0.84 -1.5 2,097,158 - CA264_08975 0.84 -0.8 2,097,184 + CA264_08975 0.87 +0.2 2,097,191 - CA264_08975 0.88 -0.2 2,097,214 - -2.8 2,097,364 + -1.0 2,097,430 - -0.6 2,097,489 + CA264_08980 0.17 -0.4 2,097,525 + CA264_08980 0.27 -0.5 2,097,526 - CA264_08980 0.27 -0.5 2,097,526 - CA264_08980 0.27 -1.2 2,097,637 + CA264_08980 0.57 -0.7 2,097,638 - CA264_08980 0.57 -2.0 2,097,673 + CA264_08980 0.67 +0.8 2,097,674 - CA264_08980 0.67 +1.0 2,097,700 + CA264_08980 0.74 -1.0 2,097,700 + CA264_08980 0.74 -1.4 2,097,781 - -0.7 2,097,801 + -0.1 2,097,801 + -0.6 2,097,801 - -1.3 2,097,820 + -0.1 2,097,959 - CA264_08985 0.11 -0.4 2,098,192 + CA264_08985 0.27 +0.9
Or see this region's nucleotide sequence