Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07570

Experiment: m.b. D-Cycloserine 0.032 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_07560 and CA264_07565 are separated by 175 nucleotidesCA264_07565 and CA264_07570 are separated by 82 nucleotidesCA264_07570 and CA264_07575 are separated by 168 nucleotides CA264_07560: CA264_07560 - DNA helicase RecQ, at 1,752,796 to 1,754,928 _07560 CA264_07565: CA264_07565 - four-helix bundle copper-binding protein, at 1,755,104 to 1,755,439 _07565 CA264_07570: CA264_07570 - hypothetical protein, at 1,755,522 to 1,755,854 _07570 CA264_07575: CA264_07575 - agmatinase, at 1,756,023 to 1,757,093 _07575 Position (kb) 1755 1756Strain fitness (log2 ratio) -1 0 1at 1754.589 kb on - strand, within CA264_07560at 1754.589 kb on - strand, within CA264_07560at 1754.666 kb on + strand, within CA264_07560at 1754.749 kb on - strandat 1754.778 kb on - strandat 1754.812 kb on + strandat 1754.891 kb on - strandat 1754.928 kb on + strandat 1754.928 kb on + strandat 1754.933 kb on - strandat 1754.933 kb on - strandat 1754.961 kb on + strandat 1754.962 kb on - strandat 1754.962 kb on - strandat 1754.996 kb on + strandat 1755.017 kb on + strandat 1755.018 kb on - strandat 1755.018 kb on - strandat 1755.048 kb on + strandat 1755.048 kb on + strandat 1755.048 kb on + strandat 1755.049 kb on - strandat 1755.049 kb on - strandat 1755.049 kb on - strandat 1755.049 kb on - strandat 1755.067 kb on - strandat 1755.082 kb on + strandat 1755.098 kb on - strandat 1755.223 kb on + strand, within CA264_07565at 1755.249 kb on + strand, within CA264_07565at 1755.357 kb on - strand, within CA264_07565at 1755.357 kb on - strand, within CA264_07565at 1755.443 kb on - strandat 1755.450 kb on - strandat 1755.451 kb on + strandat 1755.452 kb on - strandat 1755.458 kb on - strandat 1755.476 kb on + strandat 1755.537 kb on + strandat 1755.537 kb on + strandat 1755.750 kb on + strand, within CA264_07570at 1755.750 kb on + strand, within CA264_07570at 1755.750 kb on + strand, within CA264_07570at 1755.779 kb on + strand, within CA264_07570at 1755.779 kb on + strand, within CA264_07570at 1755.780 kb on - strand, within CA264_07570at 1755.799 kb on + strand, within CA264_07570at 1755.799 kb on + strand, within CA264_07570at 1755.845 kb on + strandat 1755.846 kb on - strandat 1755.873 kb on - strandat 1755.875 kb on - strandat 1755.876 kb on + strandat 1755.876 kb on + strandat 1755.940 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
remove
1,754,589 - CA264_07560 0.84 +0.1
1,754,589 - CA264_07560 0.84 +0.1
1,754,666 + CA264_07560 0.88 -0.7
1,754,749 - -0.3
1,754,778 - +0.0
1,754,812 + -1.0
1,754,891 - -0.1
1,754,928 + +0.1
1,754,928 + -0.2
1,754,933 - -1.6
1,754,933 - -0.3
1,754,961 + -0.2
1,754,962 - -0.4
1,754,962 - +0.7
1,754,996 + -0.2
1,755,017 + -0.7
1,755,018 - -0.0
1,755,018 - -0.4
1,755,048 + -0.8
1,755,048 + -0.6
1,755,048 + -1.0
1,755,049 - -0.2
1,755,049 - -0.1
1,755,049 - +0.0
1,755,049 - -0.0
1,755,067 - -0.6
1,755,082 + +1.0
1,755,098 - -0.5
1,755,223 + CA264_07565 0.35 +0.5
1,755,249 + CA264_07565 0.43 -0.1
1,755,357 - CA264_07565 0.75 -1.1
1,755,357 - CA264_07565 0.75 -1.3
1,755,443 - -0.5
1,755,450 - -1.1
1,755,451 + -0.4
1,755,452 - +0.9
1,755,458 - -0.5
1,755,476 + -0.7
1,755,537 + -0.1
1,755,537 + +0.1
1,755,750 + CA264_07570 0.68 -0.6
1,755,750 + CA264_07570 0.68 +1.4
1,755,750 + CA264_07570 0.68 -0.3
1,755,779 + CA264_07570 0.77 -0.3
1,755,779 + CA264_07570 0.77 +0.1
1,755,780 - CA264_07570 0.77 -0.3
1,755,799 + CA264_07570 0.83 -1.1
1,755,799 + CA264_07570 0.83 -0.3
1,755,845 + -0.6
1,755,846 - -0.5
1,755,873 - +0.7
1,755,875 - +0.7
1,755,876 + -0.2
1,755,876 + +0.3
1,755,940 - +0.2

Or see this region's nucleotide sequence