Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07150

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07145 and CA264_07150 are separated by 167 nucleotidesCA264_07150 and CA264_07155 are separated by 711 nucleotides CA264_07145: CA264_07145 - bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase, at 1,647,243 to 1,648,124 _07145 CA264_07150: CA264_07150 - elongation factor 4, at 1,648,292 to 1,650,076 _07150 CA264_07155: CA264_07155 - methylmalonyl-CoA mutase, at 1,650,788 to 1,654,174 _07155 Position (kb) 1648 1649 1650 1651Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1648.130 kb on + strandat 1648.131 kb on - strandat 1648.156 kb on - strandat 1648.156 kb on - strandat 1648.196 kb on + strandat 1648.205 kb on + strandat 1648.210 kb on + strandat 1648.210 kb on + strandat 1648.211 kb on - strandat 1648.211 kb on - strandat 1648.212 kb on + strandat 1648.212 kb on + strandat 1648.214 kb on + strandat 1648.226 kb on + strandat 1648.227 kb on - strandat 1648.227 kb on - strandat 1648.232 kb on + strandat 1648.233 kb on - strandat 1648.303 kb on + strandat 1648.347 kb on - strandat 1648.816 kb on + strand, within CA264_07150at 1648.853 kb on - strand, within CA264_07150at 1648.957 kb on + strand, within CA264_07150at 1648.959 kb on + strand, within CA264_07150at 1648.959 kb on + strand, within CA264_07150at 1648.974 kb on - strand, within CA264_07150at 1649.264 kb on - strand, within CA264_07150at 1649.306 kb on - strand, within CA264_07150at 1649.310 kb on + strand, within CA264_07150at 1649.807 kb on - strand, within CA264_07150at 1649.915 kb on - strandat 1650.029 kb on - strandat 1650.076 kb on + strandat 1650.080 kb on + strandat 1650.080 kb on + strandat 1650.081 kb on - strandat 1650.081 kb on - strandat 1650.081 kb on - strandat 1650.081 kb on - strandat 1650.081 kb on - strandat 1650.081 kb on - strandat 1650.081 kb on - strandat 1650.171 kb on + strandat 1650.171 kb on + strandat 1650.171 kb on + strandat 1650.171 kb on + strandat 1650.172 kb on - strandat 1650.174 kb on - strandat 1650.249 kb on + strandat 1650.249 kb on + strandat 1650.250 kb on - strandat 1650.253 kb on + strandat 1650.275 kb on + strandat 1650.275 kb on + strandat 1650.364 kb on - strandat 1650.381 kb on - strandat 1650.458 kb on + strandat 1650.459 kb on - strandat 1650.467 kb on - strandat 1650.551 kb on + strandat 1650.642 kb on - strandat 1650.649 kb on - strandat 1650.649 kb on - strandat 1650.658 kb on - strandat 1650.682 kb on + strandat 1650.688 kb on + strandat 1650.688 kb on + strandat 1650.728 kb on + strandat 1650.729 kb on - strandat 1650.729 kb on - strandat 1650.729 kb on - strandat 1650.750 kb on + strandat 1650.751 kb on - strandat 1650.751 kb on - strandat 1650.751 kb on - strandat 1650.783 kb on + strandat 1650.783 kb on + strandat 1650.783 kb on + strandat 1650.783 kb on + strandat 1650.783 kb on + strandat 1650.784 kb on - strandat 1650.785 kb on + strandat 1650.785 kb on + strandat 1650.785 kb on + strandat 1650.786 kb on - strandat 1650.800 kb on - strandat 1650.805 kb on - strandat 1650.805 kb on - strandat 1650.805 kb on - strandat 1650.812 kb on + strandat 1650.812 kb on + strandat 1650.812 kb on + strandat 1650.813 kb on - strandat 1650.823 kb on - strandat 1650.829 kb on + strandat 1650.829 kb on + strandat 1650.835 kb on + strandat 1650.841 kb on + strandat 1650.895 kb on + strandat 1650.900 kb on + strandat 1650.921 kb on + strandat 1650.922 kb on - strandat 1651.037 kb on + strandat 1651.038 kb on - strandat 1651.043 kb on + strandat 1651.044 kb on - strandat 1651.044 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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1,648,130 + -0.2
1,648,131 - -1.9
1,648,156 - -0.1
1,648,156 - +0.1
1,648,196 + +1.0
1,648,205 + -0.4
1,648,210 + -1.3
1,648,210 + +0.8
1,648,211 - +0.1
1,648,211 - +0.4
1,648,212 + +1.1
1,648,212 + -0.1
1,648,214 + +0.6
1,648,226 + +0.4
1,648,227 - +1.0
1,648,227 - +1.1
1,648,232 + +0.7
1,648,233 - +0.8
1,648,303 + -1.6
1,648,347 - -1.6
1,648,816 + CA264_07150 0.29 -2.6
1,648,853 - CA264_07150 0.31 -1.5
1,648,957 + CA264_07150 0.37 -0.4
1,648,959 + CA264_07150 0.37 -1.0
1,648,959 + CA264_07150 0.37 -1.3
1,648,974 - CA264_07150 0.38 -0.9
1,649,264 - CA264_07150 0.54 -0.8
1,649,306 - CA264_07150 0.57 -1.1
1,649,310 + CA264_07150 0.57 -0.8
1,649,807 - CA264_07150 0.85 -1.8
1,649,915 - -0.8
1,650,029 - -2.3
1,650,076 + -1.0
1,650,080 + +0.6
1,650,080 + +0.1
1,650,081 - -0.6
1,650,081 - -1.2
1,650,081 - -1.4
1,650,081 - -0.0
1,650,081 - +0.3
1,650,081 - -0.3
1,650,081 - -0.2
1,650,171 + -0.3
1,650,171 + +1.2
1,650,171 + +0.9
1,650,171 + -0.1
1,650,172 - -1.0
1,650,174 - +0.1
1,650,249 + +1.0
1,650,249 + -0.6
1,650,250 - +0.0
1,650,253 + +2.3
1,650,275 + -0.8
1,650,275 + +1.2
1,650,364 - +0.3
1,650,381 - +0.4
1,650,458 + -0.1
1,650,459 - -0.2
1,650,467 - +1.4
1,650,551 + +0.3
1,650,642 - -1.9
1,650,649 - +1.2
1,650,649 - -1.2
1,650,658 - +1.0
1,650,682 + -0.8
1,650,688 + -0.1
1,650,688 + +0.8
1,650,728 + -0.1
1,650,729 - -2.1
1,650,729 - +1.1
1,650,729 - +0.5
1,650,750 + +0.3
1,650,751 - +0.4
1,650,751 - +0.0
1,650,751 - +0.5
1,650,783 + -0.2
1,650,783 + -0.3
1,650,783 + +0.6
1,650,783 + +0.0
1,650,783 + -0.1
1,650,784 - +1.4
1,650,785 + -0.3
1,650,785 + -2.8
1,650,785 + -0.5
1,650,786 - +0.1
1,650,800 - -0.5
1,650,805 - -0.5
1,650,805 - +0.0
1,650,805 - -0.9
1,650,812 + -1.5
1,650,812 + -0.1
1,650,812 + +0.1
1,650,813 - -0.4
1,650,823 - +0.1
1,650,829 + -0.4
1,650,829 + -0.3
1,650,835 + +0.9
1,650,841 + -0.8
1,650,895 + +0.9
1,650,900 + -0.1
1,650,921 + +0.3
1,650,922 - -0.3
1,651,037 + -2.0
1,651,038 - -0.5
1,651,043 + -1.8
1,651,044 - -0.3
1,651,044 - +0.3

Or see this region's nucleotide sequence