Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06620

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_06615 and CA264_06620 are separated by 61 nucleotidesCA264_06620 and CA264_06625 are separated by 156 nucleotides CA264_06615: CA264_06615 - iron/manganese transporter, at 1,523,655 to 1,525,538 _06615 CA264_06620: CA264_06620 - thioredoxin, at 1,525,600 to 1,526,214 _06620 CA264_06625: CA264_06625 - tRNA modification GTPase, at 1,526,371 to 1,527,750 _06625 Position (kb) 1525 1526 1527Strain fitness (log2 ratio) -3 -2 -1 0 1at 1525.237 kb on + strand, within CA264_06615at 1525.238 kb on - strand, within CA264_06615at 1525.415 kb on + strandat 1525.532 kb on + strandat 1525.535 kb on - strandat 1525.537 kb on - strandat 1525.548 kb on + strandat 1525.570 kb on + strandat 1525.611 kb on - strandat 1525.788 kb on - strand, within CA264_06620at 1525.792 kb on - strand, within CA264_06620at 1525.839 kb on + strand, within CA264_06620at 1525.849 kb on + strand, within CA264_06620at 1525.850 kb on - strand, within CA264_06620at 1525.936 kb on + strand, within CA264_06620at 1525.962 kb on + strand, within CA264_06620at 1525.962 kb on + strand, within CA264_06620at 1525.980 kb on + strand, within CA264_06620at 1526.172 kb on + strandat 1526.173 kb on - strandat 1526.173 kb on - strandat 1526.251 kb on - strandat 1526.305 kb on + strandat 1526.325 kb on + strandat 1526.329 kb on + strandat 1526.330 kb on - strandat 1526.330 kb on - strandat 1526.357 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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1,525,237 + CA264_06615 0.84 -1.1
1,525,238 - CA264_06615 0.84 -2.1
1,525,415 + -0.5
1,525,532 + -1.7
1,525,535 - -1.1
1,525,537 - -3.7
1,525,548 + -1.5
1,525,570 + -0.5
1,525,611 - -3.1
1,525,788 - CA264_06620 0.31 -0.8
1,525,792 - CA264_06620 0.31 -2.2
1,525,839 + CA264_06620 0.39 -0.8
1,525,849 + CA264_06620 0.40 -1.0
1,525,850 - CA264_06620 0.41 -2.7
1,525,936 + CA264_06620 0.55 +0.6
1,525,962 + CA264_06620 0.59 +0.4
1,525,962 + CA264_06620 0.59 -0.7
1,525,980 + CA264_06620 0.62 +0.5
1,526,172 + -0.1
1,526,173 - -0.7
1,526,173 - -0.3
1,526,251 - -1.6
1,526,305 + +1.1
1,526,325 + -0.6
1,526,329 + -0.8
1,526,330 - +0.3
1,526,330 - -0.9
1,526,357 - -1.3

Or see this region's nucleotide sequence