Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04960

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04950 and CA264_04955 are separated by 2 nucleotidesCA264_04955 and CA264_04960 are separated by 11 nucleotidesCA264_04960 and CA264_04965 are separated by 18 nucleotides CA264_04950: CA264_04950 - biopolymer transporter ExbB, at 1,151,386 to 1,151,982 _04950 CA264_04955: CA264_04955 - biopolymer transporter ExbD, at 1,151,985 to 1,152,380 _04955 CA264_04960: CA264_04960 - hypothetical protein, at 1,152,392 to 1,153,318 _04960 CA264_04965: CA264_04965 - dihydrofolate synthase, at 1,153,337 to 1,154,632 _04965 Position (kb) 1152 1153 1154Strain fitness (log2 ratio) -1 0 1at 1151.724 kb on + strand, within CA264_04950at 1151.981 kb on - strandat 1152.378 kb on + strandat 1152.389 kb on - strandat 1152.391 kb on + strandat 1152.392 kb on - strandat 1152.488 kb on + strand, within CA264_04960at 1153.366 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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1,151,724 + CA264_04950 0.57 -0.4
1,151,981 - +0.2
1,152,378 + +0.6
1,152,389 - -1.1
1,152,391 + -1.5
1,152,392 - -0.9
1,152,488 + CA264_04960 0.10 -0.6
1,153,366 - -0.3

Or see this region's nucleotide sequence