Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04880

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04870 and CA264_04875 are separated by 111 nucleotidesCA264_04875 and CA264_04880 are separated by 138 nucleotidesCA264_04880 and CA264_04885 are separated by 191 nucleotides CA264_04870: CA264_04870 - permease, at 1,129,503 to 1,130,915 _04870 CA264_04875: CA264_04875 - 30S ribosomal protein S15, at 1,131,027 to 1,131,302 _04875 CA264_04880: CA264_04880 - polyribonucleotide nucleotidyltransferase, at 1,131,441 to 1,133,579 _04880 CA264_04885: CA264_04885 - RNA polymerase subunit sigma, at 1,133,771 to 1,134,634 _04885 Position (kb) 1131 1132 1133 1134Strain fitness (log2 ratio) -1 0 1at 1130.923 kb on - strandat 1130.925 kb on - strandat 1130.927 kb on - strandat 1130.982 kb on + strandat 1131.286 kb on + strandat 1133.341 kb on - strand, within CA264_04880at 1133.641 kb on - strandat 1133.678 kb on - strandat 1133.678 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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1,130,923 - -0.3
1,130,925 - -0.5
1,130,927 - -0.7
1,130,982 + -0.3
1,131,286 + +0.2
1,133,341 - CA264_04880 0.89 +0.7
1,133,641 - -0.9
1,133,678 - +0.3
1,133,678 - +0.1

Or see this region's nucleotide sequence