Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02525

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02515 and CA264_02520 are separated by 99 nucleotidesCA264_02520 and CA264_02525 are separated by 24 nucleotidesCA264_02525 and CA264_02530 are separated by 111 nucleotides CA264_02515: CA264_02515 - nitrite reductase, at 586,848 to 588,941 _02515 CA264_02520: CA264_02520 - uroporphyrinogen-III C-methyltransferase, at 589,041 to 589,877 _02520 CA264_02525: CA264_02525 - siroheme synthase, at 589,902 to 591,431 _02525 CA264_02530: CA264_02530 - O-succinylhomoserine sulfhydrylase, at 591,543 to 592,706 _02530 Position (kb) 589 590 591 592Strain fitness (log2 ratio) -2 -1 0 1at 588.972 kb on - strandat 588.996 kb on + strandat 588.997 kb on - strandat 589.063 kb on + strandat 589.070 kb on + strandat 589.070 kb on + strandat 589.107 kb on + strandat 589.107 kb on + strandat 589.109 kb on + strandat 589.133 kb on - strand, within CA264_02520at 589.133 kb on - strand, within CA264_02520at 589.237 kb on + strand, within CA264_02520at 589.242 kb on + strand, within CA264_02520at 589.267 kb on + strand, within CA264_02520at 589.315 kb on + strand, within CA264_02520at 589.469 kb on + strand, within CA264_02520at 589.507 kb on + strand, within CA264_02520at 589.507 kb on + strand, within CA264_02520at 589.508 kb on - strand, within CA264_02520at 589.538 kb on + strand, within CA264_02520at 589.539 kb on - strand, within CA264_02520at 589.577 kb on - strand, within CA264_02520at 589.610 kb on - strand, within CA264_02520at 589.610 kb on - strand, within CA264_02520at 589.624 kb on + strand, within CA264_02520at 589.629 kb on - strand, within CA264_02520at 589.629 kb on - strand, within CA264_02520at 589.676 kb on + strand, within CA264_02520at 589.676 kb on + strand, within CA264_02520at 589.677 kb on - strand, within CA264_02520at 589.691 kb on - strand, within CA264_02520at 589.742 kb on + strand, within CA264_02520at 589.743 kb on - strand, within CA264_02520at 589.746 kb on - strand, within CA264_02520at 589.746 kb on - strand, within CA264_02520at 589.749 kb on - strand, within CA264_02520at 589.811 kb on + strandat 589.811 kb on + strandat 589.811 kb on + strandat 589.812 kb on - strandat 589.812 kb on - strandat 589.815 kb on + strandat 589.815 kb on + strandat 589.873 kb on + strandat 589.874 kb on - strandat 589.874 kb on - strandat 589.874 kb on - strandat 589.875 kb on + strandat 589.876 kb on - strandat 589.876 kb on - strandat 589.879 kb on + strandat 589.881 kb on + strandat 589.881 kb on + strandat 589.897 kb on + strandat 589.926 kb on - strandat 590.058 kb on - strand, within CA264_02525at 590.059 kb on + strand, within CA264_02525at 590.086 kb on + strand, within CA264_02525at 590.086 kb on + strand, within CA264_02525at 590.086 kb on + strand, within CA264_02525at 590.149 kb on + strand, within CA264_02525at 590.150 kb on - strand, within CA264_02525at 590.444 kb on + strand, within CA264_02525at 590.655 kb on - strand, within CA264_02525at 590.672 kb on - strand, within CA264_02525at 590.684 kb on - strand, within CA264_02525at 590.732 kb on + strand, within CA264_02525at 590.824 kb on + strand, within CA264_02525at 590.888 kb on - strand, within CA264_02525at 590.895 kb on - strand, within CA264_02525at 590.895 kb on - strand, within CA264_02525at 590.950 kb on - strand, within CA264_02525at 591.020 kb on - strand, within CA264_02525at 591.209 kb on - strand, within CA264_02525at 591.374 kb on - strandat 591.400 kb on + strandat 591.519 kb on + strandat 591.536 kb on + strandat 591.543 kb on - strandat 591.591 kb on + strandat 591.608 kb on - strandat 591.608 kb on - strandat 591.613 kb on + strandat 591.615 kb on + strandat 591.615 kb on + strandat 591.615 kb on + strandat 591.616 kb on - strandat 591.616 kb on - strandat 591.619 kb on + strandat 591.694 kb on - strand, within CA264_02530at 591.718 kb on + strand, within CA264_02530at 591.809 kb on - strand, within CA264_02530at 591.809 kb on - strand, within CA264_02530at 591.913 kb on - strand, within CA264_02530at 591.913 kb on - strand, within CA264_02530at 591.914 kb on + strand, within CA264_02530at 591.914 kb on + strand, within CA264_02530at 591.915 kb on - strand, within CA264_02530at 591.915 kb on - strand, within CA264_02530at 591.919 kb on - strand, within CA264_02530at 591.977 kb on + strand, within CA264_02530at 591.977 kb on + strand, within CA264_02530at 591.978 kb on - strand, within CA264_02530at 591.978 kb on - strand, within CA264_02530at 591.978 kb on - strand, within CA264_02530at 591.978 kb on - strand, within CA264_02530at 591.979 kb on + strand, within CA264_02530at 591.979 kb on + strand, within CA264_02530at 591.979 kb on + strand, within CA264_02530at 591.980 kb on - strand, within CA264_02530at 591.984 kb on - strand, within CA264_02530at 591.998 kb on + strand, within CA264_02530at 592.015 kb on + strand, within CA264_02530at 592.056 kb on - strand, within CA264_02530at 592.067 kb on + strandat 592.067 kb on + strand, within CA264_02530at 592.068 kb on - strand, within CA264_02530at 592.069 kb on + strand, within CA264_02530at 592.077 kb on - strand, within CA264_02530at 592.077 kb on - strand, within CA264_02530at 592.152 kb on + strand, within CA264_02530at 592.152 kb on + strand, within CA264_02530at 592.154 kb on + strand, within CA264_02530at 592.155 kb on - strand, within CA264_02530at 592.192 kb on + strand, within CA264_02530at 592.192 kb on + strand, within CA264_02530at 592.193 kb on - strand, within CA264_02530at 592.196 kb on + strand, within CA264_02530at 592.280 kb on + strand, within CA264_02530at 592.383 kb on + strand, within CA264_02530

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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588,972 - -0.1
588,996 + -0.5
588,997 - -2.3
589,063 + -0.5
589,070 + -1.5
589,070 + -1.1
589,107 + -0.4
589,107 + -0.9
589,109 + -0.3
589,133 - CA264_02520 0.11 -1.3
589,133 - CA264_02520 0.11 -2.3
589,237 + CA264_02520 0.23 -1.1
589,242 + CA264_02520 0.24 -2.1
589,267 + CA264_02520 0.27 +0.0
589,315 + CA264_02520 0.33 -0.9
589,469 + CA264_02520 0.51 -1.7
589,507 + CA264_02520 0.56 -1.9
589,507 + CA264_02520 0.56 +0.2
589,508 - CA264_02520 0.56 -1.3
589,538 + CA264_02520 0.59 -0.6
589,539 - CA264_02520 0.59 -1.5
589,577 - CA264_02520 0.64 -1.5
589,610 - CA264_02520 0.68 -0.9
589,610 - CA264_02520 0.68 +0.4
589,624 + CA264_02520 0.70 -0.1
589,629 - CA264_02520 0.70 -0.8
589,629 - CA264_02520 0.70 -1.7
589,676 + CA264_02520 0.76 -1.5
589,676 + CA264_02520 0.76 -1.8
589,677 - CA264_02520 0.76 -1.2
589,691 - CA264_02520 0.78 -0.8
589,742 + CA264_02520 0.84 -1.0
589,743 - CA264_02520 0.84 +0.6
589,746 - CA264_02520 0.84 -2.6
589,746 - CA264_02520 0.84 -1.3
589,749 - CA264_02520 0.85 -0.9
589,811 + -1.1
589,811 + -1.6
589,811 + +0.0
589,812 - +0.2
589,812 - +0.6
589,815 + -0.1
589,815 + -1.7
589,873 + -0.4
589,874 - -0.7
589,874 - -0.9
589,874 - -1.2
589,875 + -0.5
589,876 - -0.1
589,876 - +0.8
589,879 + +0.6
589,881 + -0.7
589,881 + +0.2
589,897 + +0.6
589,926 - -1.5
590,058 - CA264_02525 0.10 -1.5
590,059 + CA264_02525 0.10 -2.5
590,086 + CA264_02525 0.12 -1.6
590,086 + CA264_02525 0.12 -1.8
590,086 + CA264_02525 0.12 -1.1
590,149 + CA264_02525 0.16 -1.6
590,150 - CA264_02525 0.16 -1.5
590,444 + CA264_02525 0.35 +0.4
590,655 - CA264_02525 0.49 -0.5
590,672 - CA264_02525 0.50 -0.1
590,684 - CA264_02525 0.51 +0.0
590,732 + CA264_02525 0.54 -0.8
590,824 + CA264_02525 0.60 -2.6
590,888 - CA264_02525 0.64 -2.6
590,895 - CA264_02525 0.65 -2.4
590,895 - CA264_02525 0.65 +1.4
590,950 - CA264_02525 0.68 +0.4
591,020 - CA264_02525 0.73 -2.2
591,209 - CA264_02525 0.85 -1.7
591,374 - -2.2
591,400 + -1.3
591,519 + -0.5
591,536 + -0.1
591,543 - -0.8
591,591 + +0.8
591,608 - -0.9
591,608 - +0.4
591,613 + +0.4
591,615 + -0.0
591,615 + -0.3
591,615 + +1.0
591,616 - -0.5
591,616 - -1.0
591,619 + -1.4
591,694 - CA264_02530 0.13 -1.5
591,718 + CA264_02530 0.15 -0.3
591,809 - CA264_02530 0.23 +0.1
591,809 - CA264_02530 0.23 -0.6
591,913 - CA264_02530 0.32 -0.7
591,913 - CA264_02530 0.32 -0.0
591,914 + CA264_02530 0.32 -0.6
591,914 + CA264_02530 0.32 -0.8
591,915 - CA264_02530 0.32 -0.2
591,915 - CA264_02530 0.32 +0.4
591,919 - CA264_02530 0.32 -0.2
591,977 + CA264_02530 0.37 +0.7
591,977 + CA264_02530 0.37 +0.4
591,978 - CA264_02530 0.37 +0.0
591,978 - CA264_02530 0.37 -0.0
591,978 - CA264_02530 0.37 -1.2
591,978 - CA264_02530 0.37 +0.3
591,979 + CA264_02530 0.37 -0.0
591,979 + CA264_02530 0.37 -1.2
591,979 + CA264_02530 0.37 -0.4
591,980 - CA264_02530 0.38 -0.4
591,984 - CA264_02530 0.38 -0.2
591,998 + CA264_02530 0.39 +0.4
592,015 + CA264_02530 0.41 -0.1
592,056 - CA264_02530 0.44 -0.5
592,067 + +0.0
592,067 + CA264_02530 0.45 -0.1
592,068 - CA264_02530 0.45 +0.2
592,069 + CA264_02530 0.45 +1.4
592,077 - CA264_02530 0.46 -0.6
592,077 - CA264_02530 0.46 -0.1
592,152 + CA264_02530 0.52 -1.1
592,152 + CA264_02530 0.52 -0.7
592,154 + CA264_02530 0.52 -0.5
592,155 - CA264_02530 0.53 -0.1
592,192 + CA264_02530 0.56 +0.6
592,192 + CA264_02530 0.56 -0.5
592,193 - CA264_02530 0.56 +0.3
592,196 + CA264_02530 0.56 +0.5
592,280 + CA264_02530 0.63 -0.8
592,383 + CA264_02530 0.72 +0.8

Or see this region's nucleotide sequence