Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01770

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01765 and CA264_01770 are separated by 115 nucleotidesCA264_01770 and CA264_01775 are separated by 448 nucleotides CA264_01765: CA264_01765 - hypothetical protein, at 417,494 to 418,564 _01765 CA264_01770: CA264_01770 - peptidase, at 418,680 to 420,479 _01770 CA264_01775: CA264_01775 - hypothetical protein, at 420,928 to 421,665 _01775 Position (kb) 418 419 420 421Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 417.714 kb on - strand, within CA264_01765at 417.749 kb on + strand, within CA264_01765at 417.749 kb on + strand, within CA264_01765at 417.749 kb on + strand, within CA264_01765at 417.767 kb on + strand, within CA264_01765at 417.793 kb on + strand, within CA264_01765at 417.822 kb on - strand, within CA264_01765at 417.871 kb on - strand, within CA264_01765at 417.898 kb on + strand, within CA264_01765at 417.923 kb on - strand, within CA264_01765at 417.975 kb on - strand, within CA264_01765at 418.002 kb on + strand, within CA264_01765at 418.003 kb on - strand, within CA264_01765at 418.003 kb on - strand, within CA264_01765at 418.021 kb on + strand, within CA264_01765at 418.028 kb on - strand, within CA264_01765at 418.058 kb on + strand, within CA264_01765at 418.196 kb on - strand, within CA264_01765at 418.243 kb on + strand, within CA264_01765at 418.243 kb on + strand, within CA264_01765at 418.249 kb on + strand, within CA264_01765at 418.250 kb on - strand, within CA264_01765at 418.335 kb on + strand, within CA264_01765at 418.336 kb on - strand, within CA264_01765at 418.339 kb on + strand, within CA264_01765at 418.339 kb on + strand, within CA264_01765at 418.339 kb on + strand, within CA264_01765at 418.339 kb on + strand, within CA264_01765at 418.340 kb on - strand, within CA264_01765at 418.445 kb on - strand, within CA264_01765at 418.480 kb on + strandat 418.486 kb on - strandat 418.532 kb on + strandat 418.543 kb on + strandat 418.544 kb on - strandat 418.544 kb on - strandat 418.547 kb on - strandat 418.580 kb on - strandat 418.592 kb on - strandat 418.659 kb on - strandat 418.681 kb on + strandat 418.829 kb on + strandat 418.830 kb on - strandat 418.830 kb on - strandat 418.830 kb on - strandat 418.888 kb on - strand, within CA264_01770at 418.914 kb on + strand, within CA264_01770at 418.915 kb on - strand, within CA264_01770at 418.963 kb on - strand, within CA264_01770at 419.050 kb on + strand, within CA264_01770at 419.105 kb on + strand, within CA264_01770at 419.110 kb on + strand, within CA264_01770at 419.111 kb on - strand, within CA264_01770at 419.131 kb on - strand, within CA264_01770at 419.158 kb on - strand, within CA264_01770at 419.200 kb on + strand, within CA264_01770at 419.208 kb on - strand, within CA264_01770at 419.223 kb on + strand, within CA264_01770at 419.259 kb on + strand, within CA264_01770at 419.259 kb on + strand, within CA264_01770at 419.260 kb on - strand, within CA264_01770at 419.270 kb on + strand, within CA264_01770at 419.274 kb on + strand, within CA264_01770at 419.274 kb on + strand, within CA264_01770at 419.287 kb on - strand, within CA264_01770at 419.289 kb on + strand, within CA264_01770at 419.290 kb on - strand, within CA264_01770at 419.305 kb on + strand, within CA264_01770at 419.341 kb on + strand, within CA264_01770at 419.342 kb on - strand, within CA264_01770at 419.348 kb on + strand, within CA264_01770at 419.372 kb on - strand, within CA264_01770at 419.426 kb on - strand, within CA264_01770at 419.432 kb on + strand, within CA264_01770at 419.454 kb on + strand, within CA264_01770at 419.454 kb on + strand, within CA264_01770at 419.455 kb on - strand, within CA264_01770at 419.494 kb on + strand, within CA264_01770at 419.497 kb on - strand, within CA264_01770at 419.574 kb on - strand, within CA264_01770at 419.624 kb on - strand, within CA264_01770at 419.656 kb on + strand, within CA264_01770at 419.657 kb on - strand, within CA264_01770at 419.668 kb on + strand, within CA264_01770at 419.669 kb on - strand, within CA264_01770at 419.669 kb on - strand, within CA264_01770at 419.669 kb on - strand, within CA264_01770at 419.721 kb on - strand, within CA264_01770at 419.721 kb on - strand, within CA264_01770at 419.723 kb on - strand, within CA264_01770at 419.820 kb on - strand, within CA264_01770at 419.820 kb on - strand, within CA264_01770at 419.828 kb on + strand, within CA264_01770at 419.828 kb on + strand, within CA264_01770at 419.829 kb on - strand, within CA264_01770at 419.829 kb on - strand, within CA264_01770at 419.829 kb on - strand, within CA264_01770at 419.830 kb on + strand, within CA264_01770at 419.830 kb on + strand, within CA264_01770at 419.831 kb on - strand, within CA264_01770at 419.831 kb on - strand, within CA264_01770at 419.831 kb on - strand, within CA264_01770at 419.831 kb on - strand, within CA264_01770at 419.831 kb on - strand, within CA264_01770at 419.831 kb on - strand, within CA264_01770at 419.834 kb on + strand, within CA264_01770at 419.907 kb on - strand, within CA264_01770at 419.914 kb on + strand, within CA264_01770at 419.914 kb on + strand, within CA264_01770at 419.915 kb on - strand, within CA264_01770at 419.915 kb on - strand, within CA264_01770at 419.930 kb on - strand, within CA264_01770at 419.933 kb on - strand, within CA264_01770at 419.933 kb on - strand, within CA264_01770at 419.964 kb on + strand, within CA264_01770at 419.988 kb on + strand, within CA264_01770at 419.989 kb on - strand, within CA264_01770at 420.016 kb on - strand, within CA264_01770at 420.152 kb on + strand, within CA264_01770at 420.196 kb on - strand, within CA264_01770at 420.240 kb on - strand, within CA264_01770at 420.337 kb on - strandat 420.378 kb on + strandat 420.469 kb on - strandat 420.469 kb on - strandat 420.479 kb on + strandat 420.479 kb on + strandat 420.500 kb on - strandat 420.515 kb on + strandat 420.545 kb on - strandat 420.563 kb on + strandat 420.614 kb on + strandat 420.703 kb on - strandat 420.727 kb on + strandat 420.727 kb on + strandat 420.732 kb on + strandat 420.733 kb on - strandat 420.746 kb on + strandat 420.757 kb on - strandat 420.757 kb on - strandat 420.757 kb on - strandat 420.758 kb on + strandat 420.836 kb on - strandat 420.838 kb on + strandat 420.838 kb on + strandat 420.839 kb on - strandat 420.839 kb on - strandat 420.839 kb on - strandat 420.839 kb on - strandat 420.841 kb on - strandat 420.886 kb on + strandat 420.923 kb on - strandat 421.054 kb on + strand, within CA264_01775at 421.055 kb on - strand, within CA264_01775at 421.146 kb on + strand, within CA264_01775at 421.150 kb on + strand, within CA264_01775at 421.213 kb on + strand, within CA264_01775at 421.241 kb on - strand, within CA264_01775at 421.241 kb on - strand, within CA264_01775at 421.262 kb on - strand, within CA264_01775at 421.262 kb on - strand, within CA264_01775at 421.298 kb on - strand, within CA264_01775at 421.335 kb on + strand, within CA264_01775at 421.345 kb on + strand, within CA264_01775at 421.348 kb on + strand, within CA264_01775at 421.349 kb on - strand, within CA264_01775at 421.349 kb on - strand, within CA264_01775at 421.444 kb on + strand, within CA264_01775at 421.445 kb on - strand, within CA264_01775

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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417,714 - CA264_01765 0.21 -0.7
417,749 + CA264_01765 0.24 +0.6
417,749 + CA264_01765 0.24 +0.2
417,749 + CA264_01765 0.24 +0.3
417,767 + CA264_01765 0.25 -0.7
417,793 + CA264_01765 0.28 -0.7
417,822 - CA264_01765 0.31 -0.5
417,871 - CA264_01765 0.35 -1.1
417,898 + CA264_01765 0.38 -0.6
417,923 - CA264_01765 0.40 +0.2
417,975 - CA264_01765 0.45 -0.3
418,002 + CA264_01765 0.47 -1.0
418,003 - CA264_01765 0.48 -0.2
418,003 - CA264_01765 0.48 -0.3
418,021 + CA264_01765 0.49 -1.5
418,028 - CA264_01765 0.50 +0.6
418,058 + CA264_01765 0.53 +1.0
418,196 - CA264_01765 0.66 -1.4
418,243 + CA264_01765 0.70 -0.2
418,243 + CA264_01765 0.70 -0.1
418,249 + CA264_01765 0.70 +0.5
418,250 - CA264_01765 0.71 -1.0
418,335 + CA264_01765 0.79 +0.9
418,336 - CA264_01765 0.79 -0.4
418,339 + CA264_01765 0.79 -0.8
418,339 + CA264_01765 0.79 +0.6
418,339 + CA264_01765 0.79 -0.0
418,339 + CA264_01765 0.79 +0.1
418,340 - CA264_01765 0.79 -0.9
418,445 - CA264_01765 0.89 -0.6
418,480 + +0.5
418,486 - +0.1
418,532 + -0.0
418,543 + -1.3
418,544 - -1.1
418,544 - -0.6
418,547 - +0.3
418,580 - -1.7
418,592 - -0.7
418,659 - +0.4
418,681 + +0.3
418,829 + -0.8
418,830 - -0.5
418,830 - -1.1
418,830 - +0.6
418,888 - CA264_01770 0.12 +0.3
418,914 + CA264_01770 0.13 -0.2
418,915 - CA264_01770 0.13 -1.0
418,963 - CA264_01770 0.16 -0.4
419,050 + CA264_01770 0.21 -1.0
419,105 + CA264_01770 0.24 -2.0
419,110 + CA264_01770 0.24 -0.9
419,111 - CA264_01770 0.24 -0.3
419,131 - CA264_01770 0.25 +0.4
419,158 - CA264_01770 0.27 -0.5
419,200 + CA264_01770 0.29 -1.0
419,208 - CA264_01770 0.29 -0.6
419,223 + CA264_01770 0.30 -2.1
419,259 + CA264_01770 0.32 +0.6
419,259 + CA264_01770 0.32 +0.2
419,260 - CA264_01770 0.32 +0.1
419,270 + CA264_01770 0.33 +0.2
419,274 + CA264_01770 0.33 -1.0
419,274 + CA264_01770 0.33 -0.9
419,287 - CA264_01770 0.34 -0.4
419,289 + CA264_01770 0.34 -1.8
419,290 - CA264_01770 0.34 +0.7
419,305 + CA264_01770 0.35 -0.9
419,341 + CA264_01770 0.37 -1.2
419,342 - CA264_01770 0.37 -0.7
419,348 + CA264_01770 0.37 -0.2
419,372 - CA264_01770 0.38 -0.5
419,426 - CA264_01770 0.41 -0.6
419,432 + CA264_01770 0.42 -0.6
419,454 + CA264_01770 0.43 +0.8
419,454 + CA264_01770 0.43 +0.1
419,455 - CA264_01770 0.43 -0.5
419,494 + CA264_01770 0.45 +0.2
419,497 - CA264_01770 0.45 +1.1
419,574 - CA264_01770 0.50 +0.8
419,624 - CA264_01770 0.52 -1.0
419,656 + CA264_01770 0.54 +1.8
419,657 - CA264_01770 0.54 -0.1
419,668 + CA264_01770 0.55 +0.4
419,669 - CA264_01770 0.55 +0.3
419,669 - CA264_01770 0.55 -0.7
419,669 - CA264_01770 0.55 -0.2
419,721 - CA264_01770 0.58 +0.7
419,721 - CA264_01770 0.58 -1.3
419,723 - CA264_01770 0.58 -1.0
419,820 - CA264_01770 0.63 -1.0
419,820 - CA264_01770 0.63 +0.3
419,828 + CA264_01770 0.64 +0.7
419,828 + CA264_01770 0.64 -0.1
419,829 - CA264_01770 0.64 -0.1
419,829 - CA264_01770 0.64 -0.4
419,829 - CA264_01770 0.64 -2.0
419,830 + CA264_01770 0.64 -1.3
419,830 + CA264_01770 0.64 -0.3
419,831 - CA264_01770 0.64 +0.2
419,831 - CA264_01770 0.64 -2.1
419,831 - CA264_01770 0.64 +0.2
419,831 - CA264_01770 0.64 -0.7
419,831 - CA264_01770 0.64 -0.3
419,831 - CA264_01770 0.64 -0.5
419,834 + CA264_01770 0.64 -0.0
419,907 - CA264_01770 0.68 -0.8
419,914 + CA264_01770 0.69 +0.1
419,914 + CA264_01770 0.69 -0.6
419,915 - CA264_01770 0.69 -0.9
419,915 - CA264_01770 0.69 -0.5
419,930 - CA264_01770 0.69 +1.0
419,933 - CA264_01770 0.70 -0.8
419,933 - CA264_01770 0.70 -0.5
419,964 + CA264_01770 0.71 -0.8
419,988 + CA264_01770 0.73 -0.4
419,989 - CA264_01770 0.73 +0.4
420,016 - CA264_01770 0.74 -0.2
420,152 + CA264_01770 0.82 -1.5
420,196 - CA264_01770 0.84 +0.0
420,240 - CA264_01770 0.87 -1.0
420,337 - -1.0
420,378 + -1.5
420,469 - -0.2
420,469 - +1.1
420,479 + -1.0
420,479 + -1.1
420,500 - -0.1
420,515 + -0.5
420,545 - +0.4
420,563 + -0.1
420,614 + -0.6
420,703 - -0.5
420,727 + -0.7
420,727 + -0.0
420,732 + -0.7
420,733 - -3.5
420,746 + +0.8
420,757 - +0.5
420,757 - +0.2
420,757 - -0.4
420,758 + -0.8
420,836 - +2.2
420,838 + +0.2
420,838 + -0.0
420,839 - -1.5
420,839 - -0.6
420,839 - -0.0
420,839 - +0.1
420,841 - -0.9
420,886 + +0.3
420,923 - +1.2
421,054 + CA264_01775 0.17 +1.4
421,055 - CA264_01775 0.17 +1.8
421,146 + CA264_01775 0.30 +0.3
421,150 + CA264_01775 0.30 +1.4
421,213 + CA264_01775 0.39 -0.7
421,241 - CA264_01775 0.42 +0.5
421,241 - CA264_01775 0.42 -1.9
421,262 - CA264_01775 0.45 -0.7
421,262 - CA264_01775 0.45 +1.0
421,298 - CA264_01775 0.50 -1.1
421,335 + CA264_01775 0.55 +0.1
421,345 + CA264_01775 0.57 +0.6
421,348 + CA264_01775 0.57 +0.0
421,349 - CA264_01775 0.57 -0.8
421,349 - CA264_01775 0.57 -0.2
421,444 + CA264_01775 0.70 -1.3
421,445 - CA264_01775 0.70 -0.5

Or see this region's nucleotide sequence