Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01685

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01675 and CA264_01680 are separated by 89 nucleotidesCA264_01680 and CA264_01685 are separated by 359 nucleotidesCA264_01685 and CA264_01690 are separated by 206 nucleotidesCA264_01690 and CA264_01695 are separated by 15 nucleotides CA264_01675: CA264_01675 - hypothetical protein, at 394,269 to 394,658 _01675 CA264_01680: CA264_01680 - RDD family protein, at 394,748 to 395,251 _01680 CA264_01685: CA264_01685 - glutamate racemase, at 395,611 to 396,426 _01685 CA264_01690: CA264_01690 - hypothetical protein, at 396,633 to 397,178 _01690 CA264_01695: CA264_01695 - glutathionylspermidine synthase, at 397,194 to 398,372 _01695 Position (kb) 395 396 397Strain fitness (log2 ratio) -3 -2 -1 0 1at 394.618 kb on + strand, within CA264_01675at 394.618 kb on + strand, within CA264_01675at 394.619 kb on - strand, within CA264_01675at 394.623 kb on + strandat 394.623 kb on + strandat 394.623 kb on + strandat 394.659 kb on - strandat 394.662 kb on - strandat 394.728 kb on + strandat 394.749 kb on + strandat 394.866 kb on + strand, within CA264_01680at 394.933 kb on + strand, within CA264_01680at 394.978 kb on + strand, within CA264_01680at 394.979 kb on - strand, within CA264_01680at 394.979 kb on - strand, within CA264_01680at 394.979 kb on - strand, within CA264_01680at 394.979 kb on - strand, within CA264_01680at 394.980 kb on + strand, within CA264_01680at 394.980 kb on + strand, within CA264_01680at 394.980 kb on + strand, within CA264_01680at 394.980 kb on + strand, within CA264_01680at 394.980 kb on + strand, within CA264_01680at 394.980 kb on + strand, within CA264_01680at 394.980 kb on + strand, within CA264_01680at 394.980 kb on + strand, within CA264_01680at 394.981 kb on - strand, within CA264_01680at 394.981 kb on - strand, within CA264_01680at 394.981 kb on - strand, within CA264_01680at 394.981 kb on - strand, within CA264_01680at 394.983 kb on + strand, within CA264_01680at 394.983 kb on + strand, within CA264_01680at 395.056 kb on + strand, within CA264_01680at 395.088 kb on + strand, within CA264_01680at 395.088 kb on + strand, within CA264_01680at 395.123 kb on + strand, within CA264_01680at 395.125 kb on + strand, within CA264_01680at 395.159 kb on + strand, within CA264_01680at 395.160 kb on - strand, within CA264_01680at 395.197 kb on - strand, within CA264_01680at 395.219 kb on - strandat 395.236 kb on + strandat 395.237 kb on - strandat 395.237 kb on - strandat 395.238 kb on + strandat 395.238 kb on + strandat 395.239 kb on - strandat 395.239 kb on - strandat 395.239 kb on - strandat 395.239 kb on - strandat 395.269 kb on + strandat 395.270 kb on - strandat 395.281 kb on - strandat 395.293 kb on + strandat 395.293 kb on + strandat 395.293 kb on + strandat 395.306 kb on + strandat 395.306 kb on + strandat 395.307 kb on - strandat 395.344 kb on - strandat 395.374 kb on + strandat 395.392 kb on + strandat 395.543 kb on + strandat 395.557 kb on + strandat 395.561 kb on + strandat 395.562 kb on - strandat 395.610 kb on + strandat 396.435 kb on + strandat 396.435 kb on + strandat 396.436 kb on - strandat 396.453 kb on - strandat 396.473 kb on - strandat 396.494 kb on - strandat 396.521 kb on - strandat 396.538 kb on + strandat 396.542 kb on - strandat 396.576 kb on - strandat 396.583 kb on + strandat 396.584 kb on - strandat 396.608 kb on + strandat 396.680 kb on + strandat 396.820 kb on + strand, within CA264_01690at 396.863 kb on - strand, within CA264_01690at 396.863 kb on - strand, within CA264_01690at 396.871 kb on - strand, within CA264_01690at 397.006 kb on - strand, within CA264_01690at 397.008 kb on - strand, within CA264_01690at 397.020 kb on - strand, within CA264_01690at 397.042 kb on - strand, within CA264_01690at 397.042 kb on - strand, within CA264_01690at 397.044 kb on + strand, within CA264_01690at 397.044 kb on + strand, within CA264_01690at 397.070 kb on + strand, within CA264_01690at 397.094 kb on - strand, within CA264_01690at 397.101 kb on + strand, within CA264_01690at 397.176 kb on + strandat 397.189 kb on + strandat 397.189 kb on + strandat 397.190 kb on - strandat 397.240 kb on + strandat 397.241 kb on - strandat 397.299 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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394,618 + CA264_01675 0.89 -0.9
394,618 + CA264_01675 0.89 -1.3
394,619 - CA264_01675 0.90 +0.2
394,623 + +0.3
394,623 + -0.0
394,623 + +0.4
394,659 - +0.5
394,662 - -1.2
394,728 + -0.2
394,749 + +1.3
394,866 + CA264_01680 0.23 -1.4
394,933 + CA264_01680 0.37 +0.2
394,978 + CA264_01680 0.46 -0.5
394,979 - CA264_01680 0.46 -0.3
394,979 - CA264_01680 0.46 +0.6
394,979 - CA264_01680 0.46 -0.4
394,979 - CA264_01680 0.46 -0.2
394,980 + CA264_01680 0.46 -0.2
394,980 + CA264_01680 0.46 -0.5
394,980 + CA264_01680 0.46 -1.4
394,980 + CA264_01680 0.46 +0.5
394,980 + CA264_01680 0.46 +0.2
394,980 + CA264_01680 0.46 +0.4
394,980 + CA264_01680 0.46 -0.1
394,980 + CA264_01680 0.46 +0.8
394,981 - CA264_01680 0.46 -0.0
394,981 - CA264_01680 0.46 +0.3
394,981 - CA264_01680 0.46 -0.1
394,981 - CA264_01680 0.46 -0.8
394,983 + CA264_01680 0.47 -0.3
394,983 + CA264_01680 0.47 +0.2
395,056 + CA264_01680 0.61 -1.0
395,088 + CA264_01680 0.67 -1.4
395,088 + CA264_01680 0.67 -1.4
395,123 + CA264_01680 0.74 -0.0
395,125 + CA264_01680 0.75 +0.5
395,159 + CA264_01680 0.82 -1.0
395,160 - CA264_01680 0.82 +1.1
395,197 - CA264_01680 0.89 -0.6
395,219 - -1.0
395,236 + +0.5
395,237 - +0.4
395,237 - +0.2
395,238 + -0.2
395,238 + +0.6
395,239 - +0.1
395,239 - +0.0
395,239 - +0.3
395,239 - +1.4
395,269 + +1.2
395,270 - -0.1
395,281 - +0.4
395,293 + -1.2
395,293 + -3.3
395,293 + -0.7
395,306 + -0.2
395,306 + -1.7
395,307 - +0.5
395,344 - +0.8
395,374 + -0.0
395,392 + +0.4
395,543 + -0.1
395,557 + +0.2
395,561 + -0.2
395,562 - -1.7
395,610 + -0.3
396,435 + +1.6
396,435 + -1.4
396,436 - -0.7
396,453 - +0.3
396,473 - -0.5
396,494 - -0.5
396,521 - -0.1
396,538 + +0.5
396,542 - -0.7
396,576 - -0.5
396,583 + -1.3
396,584 - -1.4
396,608 + -0.9
396,680 + -0.7
396,820 + CA264_01690 0.34 +0.1
396,863 - CA264_01690 0.42 -0.6
396,863 - CA264_01690 0.42 -0.1
396,871 - CA264_01690 0.44 +0.2
397,006 - CA264_01690 0.68 -0.2
397,008 - CA264_01690 0.69 +0.7
397,020 - CA264_01690 0.71 +0.2
397,042 - CA264_01690 0.75 -1.8
397,042 - CA264_01690 0.75 -0.3
397,044 + CA264_01690 0.75 +0.3
397,044 + CA264_01690 0.75 -0.6
397,070 + CA264_01690 0.80 -1.5
397,094 - CA264_01690 0.84 +0.5
397,101 + CA264_01690 0.86 -2.3
397,176 + -0.7
397,189 + -0.1
397,189 + -0.6
397,190 - +0.4
397,240 + -0.0
397,241 - +0.2
397,299 + -0.4

Or see this region's nucleotide sequence