Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00645

Experiment: m.b. D-Cycloserine 0.032 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_00640 and CA264_00645 overlap by 45 nucleotidesCA264_00645 and CA264_00650 are separated by 0 nucleotides CA264_00640: CA264_00640 - 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase, at 141,380 to 142,189 _00640 CA264_00645: CA264_00645 - EamA family transporter, at 142,145 to 143,086 _00645 CA264_00650: CA264_00650 - permease, at 143,087 to 144,163 _00650 Position (kb) 142 143 144Strain fitness (log2 ratio) -3 -2 -1 0 1at 141.190 kb on + strandat 141.191 kb on - strandat 141.194 kb on + strandat 141.274 kb on + strandat 141.277 kb on + strandat 141.278 kb on - strandat 141.280 kb on - strandat 141.347 kb on - strandat 141.360 kb on + strandat 141.360 kb on + strandat 142.262 kb on + strand, within CA264_00645at 142.267 kb on - strand, within CA264_00645at 142.314 kb on - strand, within CA264_00645at 142.402 kb on - strand, within CA264_00645at 142.408 kb on - strand, within CA264_00645at 142.441 kb on - strand, within CA264_00645at 142.551 kb on + strand, within CA264_00645at 142.551 kb on + strand, within CA264_00645at 142.568 kb on - strand, within CA264_00645at 142.643 kb on - strand, within CA264_00645at 142.692 kb on + strand, within CA264_00645at 142.693 kb on - strand, within CA264_00645at 143.022 kb on - strandat 143.022 kb on - strandat 143.022 kb on - strandat 143.022 kb on - strandat 143.022 kb on - strandat 143.048 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
remove
141,190 + -0.4
141,191 - -0.9
141,194 + +1.0
141,274 + -0.3
141,277 + +0.9
141,278 - +0.7
141,280 - +0.5
141,347 - -1.3
141,360 + -1.2
141,360 + +0.8
142,262 + CA264_00645 0.12 -2.3
142,267 - CA264_00645 0.13 -1.0
142,314 - CA264_00645 0.18 -0.4
142,402 - CA264_00645 0.27 -0.9
142,408 - CA264_00645 0.28 -1.4
142,441 - CA264_00645 0.31 -0.8
142,551 + CA264_00645 0.43 -1.8
142,551 + CA264_00645 0.43 -3.1
142,568 - CA264_00645 0.45 -0.1
142,643 - CA264_00645 0.53 -0.5
142,692 + CA264_00645 0.58 -2.3
142,693 - CA264_00645 0.58 -1.5
143,022 - -1.6
143,022 - +0.1
143,022 - -2.1
143,022 - +0.1
143,022 - -1.1
143,048 - -1.4

Or see this region's nucleotide sequence