Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00565

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00550 and CA264_00555 are separated by 205 nucleotidesCA264_00555 and CA264_00560 are separated by 170 nucleotidesCA264_00560 and CA264_00565 are separated by 59 nucleotidesCA264_00565 and CA264_00570 are separated by 219 nucleotides CA264_00550: CA264_00550 - heme oxygenase, at 123,171 to 123,947 _00550 CA264_00555: CA264_00555 - hypothetical protein, at 124,153 to 124,356 _00555 CA264_00560: CA264_00560 - hypothetical protein, at 124,527 to 124,868 _00560 CA264_00565: CA264_00565 - hypothetical protein, at 124,928 to 125,161 _00565 CA264_00570: CA264_00570 - methionine--tRNA ligase, at 125,381 to 127,420 _00570 Position (kb) 124 125 126Strain fitness (log2 ratio) -2 -1 0 1 2at 124.006 kb on + strandat 124.007 kb on - strandat 124.077 kb on + strandat 124.093 kb on - strandat 124.125 kb on + strandat 124.126 kb on - strandat 124.126 kb on - strandat 124.130 kb on + strandat 124.130 kb on + strandat 124.131 kb on - strandat 124.131 kb on - strandat 124.201 kb on + strand, within CA264_00555at 124.339 kb on - strandat 124.407 kb on - strandat 124.463 kb on - strandat 124.463 kb on - strandat 124.468 kb on + strandat 124.469 kb on - strandat 124.469 kb on - strandat 124.469 kb on - strandat 124.473 kb on + strandat 124.475 kb on + strandat 124.479 kb on + strandat 124.479 kb on + strandat 124.504 kb on + strandat 124.504 kb on + strandat 124.505 kb on - strandat 124.505 kb on - strandat 124.537 kb on - strandat 124.537 kb on - strandat 124.543 kb on + strandat 124.543 kb on + strandat 124.543 kb on + strandat 124.543 kb on + strandat 124.543 kb on + strandat 124.543 kb on + strandat 124.543 kb on + strandat 124.544 kb on - strandat 124.544 kb on - strandat 124.544 kb on - strandat 124.545 kb on + strandat 124.545 kb on + strandat 124.545 kb on + strandat 124.545 kb on + strandat 124.545 kb on + strandat 124.546 kb on - strandat 124.546 kb on - strandat 124.546 kb on - strandat 124.546 kb on - strandat 124.546 kb on - strandat 124.546 kb on - strandat 124.546 kb on - strandat 124.548 kb on - strandat 124.565 kb on - strand, within CA264_00560at 124.650 kb on + strand, within CA264_00560at 124.821 kb on + strand, within CA264_00560at 124.821 kb on + strand, within CA264_00560at 124.822 kb on - strand, within CA264_00560at 124.822 kb on - strand, within CA264_00560at 124.822 kb on - strand, within CA264_00560at 124.833 kb on + strand, within CA264_00560at 124.834 kb on - strandat 124.894 kb on - strandat 125.012 kb on + strand, within CA264_00565at 125.016 kb on + strand, within CA264_00565at 125.146 kb on + strandat 125.147 kb on - strandat 125.161 kb on + strandat 125.161 kb on + strandat 125.162 kb on - strandat 125.162 kb on - strandat 125.226 kb on - strandat 125.226 kb on - strandat 125.292 kb on + strandat 125.293 kb on - strandat 125.301 kb on - strandat 125.302 kb on + strandat 125.303 kb on - strandat 125.303 kb on - strandat 125.351 kb on - strandat 125.351 kb on - strandat 125.359 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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124,006 + -0.2
124,007 - +0.2
124,077 + -1.3
124,093 - +0.3
124,125 + -1.1
124,126 - -0.2
124,126 - +1.7
124,130 + +0.4
124,130 + -0.3
124,131 - -0.4
124,131 - -1.0
124,201 + CA264_00555 0.24 +1.0
124,339 - -1.0
124,407 - +0.0
124,463 - +0.2
124,463 - +0.5
124,468 + -0.3
124,469 - +0.5
124,469 - -0.0
124,469 - -0.7
124,473 + -0.1
124,475 + -0.5
124,479 + -0.9
124,479 + +0.8
124,504 + +0.6
124,504 + -2.3
124,505 - -0.6
124,505 - -0.0
124,537 - +0.4
124,537 - +0.2
124,543 + +1.5
124,543 + -0.6
124,543 + -0.6
124,543 + -0.1
124,543 + -0.7
124,543 + +0.0
124,543 + -0.2
124,544 - +0.4
124,544 - +0.1
124,544 - -0.8
124,545 + -1.6
124,545 + -0.3
124,545 + +0.2
124,545 + +1.2
124,545 + -0.4
124,546 - +0.5
124,546 - -0.4
124,546 - -0.1
124,546 - -0.6
124,546 - -0.3
124,546 - +0.2
124,546 - -0.5
124,548 - +2.0
124,565 - CA264_00560 0.11 +0.1
124,650 + CA264_00560 0.36 -0.6
124,821 + CA264_00560 0.86 +0.5
124,821 + CA264_00560 0.86 -1.0
124,822 - CA264_00560 0.86 -0.0
124,822 - CA264_00560 0.86 -0.2
124,822 - CA264_00560 0.86 +0.2
124,833 + CA264_00560 0.89 -0.3
124,834 - -0.5
124,894 - -1.2
125,012 + CA264_00565 0.36 -0.7
125,016 + CA264_00565 0.38 -0.5
125,146 + -0.2
125,147 - +0.5
125,161 + -0.6
125,161 + -1.3
125,162 - -0.1
125,162 - -0.1
125,226 - +0.7
125,226 - -0.1
125,292 + -0.9
125,293 - -0.2
125,301 - -0.5
125,302 + -0.2
125,303 - -2.6
125,303 - +0.3
125,351 - -0.0
125,351 - +0.2
125,359 - -1.0

Or see this region's nucleotide sequence