Strain Fitness in Agrobacterium fabrum C58 around Atu1924

Experiment: D-Lysine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu1923 and Atu1924 are separated by 195 nucleotidesAtu1924 and Atu1925 are separated by 138 nucleotidesAtu1925 and Atu1926 are separated by 303 nucleotides Atu1923: Atu1923 - DNA-directed RNA polymerase alpha subunit, at 1,901,224 to 1,902,234 Atu1923 Atu1924: Atu1924 - 30S ribosomal protein S11, at 1,902,430 to 1,902,819 Atu1924 Atu1925: Atu1925 - 30S ribosomal protein S13, at 1,902,958 to 1,903,326 Atu1925 Atu1926: Atu1926 - adenylate kinase, at 1,903,630 to 1,904,220 Atu1926 Position (kb) 1902 1903Strain fitness (log2 ratio) -1 0 1at 1903.554 kb on + strandat 1903.573 kb on + strandat 1903.606 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lysine (N)
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1,903,554 + +0.0
1,903,573 + -0.1
1,903,606 + +0.1

Or see this region's nucleotide sequence