Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3745

Experiment: LB_plus_SM_buffer with FelixO1_phage (old) 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3744 and GFF3745 are separated by 347 nucleotidesGFF3745 and GFF3746 are separated by 401 nucleotidesGFF3746 and GFF4031 are separated by 302 nucleotidesGFF4031 and GFF3747 are separated by 73 nucleotides GFF3744 - O-antigen acetylase, at 10,892 to 12,721 GFF3744 GFF3745 - virulence protein, at 13,069 to 13,182 GFF3745 GFF3746 - hypothetical protein, at 13,584 to 13,718 GFF3746 GFF4031 - tRNA-Pro-GGG, at 14,021 to 14,097 GFF4031 GFF3747 - FIG001881: hydrolase of alkaline phosphatase superfamily, at 14,171 to 15,931 GFF3747 Position (kb) 13 14Strain fitness (log2 ratio) -2 -1 0 1 2at 12.105 kb on + strand, within GFF3744at 12.106 kb on - strand, within GFF3744at 12.193 kb on + strand, within GFF3744at 12.825 kb on + strandat 13.279 kb on - strandat 13.294 kb on + strandat 13.372 kb on - strandat 13.440 kb on - strandat 13.462 kb on + strandat 13.463 kb on - strandat 13.586 kb on - strandat 13.640 kb on + strand, within GFF3746at 13.837 kb on + strandat 13.838 kb on - strandat 13.838 kb on - strandat 14.111 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (old) 15 MOI
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12,105 + GFF3744 0.66 -0.1
12,106 - GFF3744 0.66 -0.1
12,193 + GFF3744 0.71 -1.0
12,825 + -0.9
13,279 - -0.9
13,294 + -1.4
13,372 - +0.3
13,440 - +0.4
13,462 + +0.9
13,463 - -0.2
13,586 - -2.5
13,640 + GFF3746 0.41 +0.2
13,837 + -0.5
13,838 - -0.2
13,838 - -0.3
14,111 - +1.9

Or see this region's nucleotide sequence