Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3234

Experiment: LB_plus_SM_buffer with FelixO1_phage (old) 15 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3233 and GFF3234 are separated by 270 nucleotidesGFF3234 and GFF3235 are separated by 426 nucleotides GFF3233 - FIG01046696: hypothetical protein, at 4,432 to 5,118 GFF3233 GFF3234 - Virulence protein msgA, at 5,389 to 5,580 GFF3234 GFF3235 - Membrane alanine aminopeptidase N (EC 3.4.11.2), at 6,007 to 8,619 GFF3235 Position (kb) 5 6Strain fitness (log2 ratio) -1 0 1at 4.500 kb on - strandat 5.581 kb on - strandat 5.904 kb on + strandat 5.963 kb on + strandat 5.983 kb on - strandat 6.191 kb on + strandat 6.196 kb on - strandat 6.226 kb on + strandat 6.227 kb on - strandat 6.299 kb on + strand, within GFF3235at 6.417 kb on - strand, within GFF3235at 6.429 kb on + strand, within GFF3235

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (old) 15 MOI
remove
4,500 - +1.0
5,581 - +1.2
5,904 + +0.0
5,963 + +1.4
5,983 - +0.5
6,191 + -1.1
6,196 - +1.0
6,226 + -0.9
6,227 - +0.1
6,299 + GFF3235 0.11 -0.7
6,417 - GFF3235 0.16 -0.4
6,429 + GFF3235 0.16 -1.1

Or see this region's nucleotide sequence