Experiment: LB_plus_SM_buffer with FelixO1_phage (old) 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1384 and GFF1385 are separated by 96 nucleotides GFF1385 and GFF1386 overlap by 41 nucleotides GFF1386 and GFF1387 are separated by 51 nucleotides GFF1387 and GFF1388 overlap by 1 nucleotides
GFF1384 - Phage tail length tape-measure protein, at 30,662 to 33,016
GFF1384
GFF1385 - hypothetical protein, at 33,113 to 33,241
GFF1385
GFF1386 - FIG00639134: hypothetical protein, at 33,201 to 33,518
GFF1386
GFF1387 - Putative phage tail core protein, at 33,570 to 34,094
GFF1387
GFF1388 - Phage tail sheath monomer, at 34,094 to 35,521
GFF1388
Position (kb) 33
34
35 Strain fitness (log2 ratio) -1
0
1 at 33.001 kb on + strand at 33.019 kb on + strand at 33.173 kb on - strand, within GFF1385 at 33.314 kb on - strand, within GFF1386 at 33.447 kb on + strand, within GFF1386 at 33.448 kb on - strand, within GFF1386 at 33.485 kb on + strand, within GFF1386 at 33.522 kb on - strand at 33.582 kb on - strand at 33.813 kb on - strand, within GFF1387 at 33.872 kb on + strand, within GFF1387 at 33.984 kb on - strand, within GFF1387 at 34.008 kb on - strand, within GFF1387 at 34.353 kb on + strand, within GFF1388 at 34.354 kb on - strand, within GFF1388 at 34.354 kb on - strand, within GFF1388 at 34.421 kb on - strand, within GFF1388 at 34.421 kb on - strand, within GFF1388 at 34.421 kb on - strand, within GFF1388 at 34.426 kb on + strand, within GFF1388 at 34.426 kb on + strand, within GFF1388 at 34.426 kb on + strand, within GFF1388 at 34.427 kb on - strand, within GFF1388 at 34.427 kb on - strand, within GFF1388 at 34.485 kb on + strand, within GFF1388 at 34.485 kb on + strand, within GFF1388 at 34.486 kb on - strand, within GFF1388 at 34.486 kb on - strand, within GFF1388 at 34.762 kb on + strand, within GFF1388 at 34.762 kb on + strand, within GFF1388 at 34.830 kb on + strand, within GFF1388 at 34.831 kb on - strand, within GFF1388 at 34.834 kb on + strand, within GFF1388 at 34.835 kb on - strand, within GFF1388 at 35.034 kb on + strand, within GFF1388 at 35.049 kb on + strand, within GFF1388 at 35.050 kb on - strand, within GFF1388
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (old) 15 MOI remove 33,001 + +0.1 33,019 + +0.8 33,173 - GFF1385 0.47 -0.8 33,314 - GFF1386 0.36 -0.3 33,447 + GFF1386 0.77 +0.4 33,448 - GFF1386 0.78 +0.1 33,485 + GFF1386 0.89 +0.2 33,522 - -1.1 33,582 - -0.0 33,813 - GFF1387 0.46 +0.9 33,872 + GFF1387 0.58 -0.2 33,984 - GFF1387 0.79 -0.8 34,008 - GFF1387 0.83 +0.5 34,353 + GFF1388 0.18 +0.4 34,354 - GFF1388 0.18 +0.4 34,354 - GFF1388 0.18 -1.1 34,421 - GFF1388 0.23 -0.2 34,421 - GFF1388 0.23 -0.0 34,421 - GFF1388 0.23 +0.4 34,426 + GFF1388 0.23 -0.8 34,426 + GFF1388 0.23 -0.4 34,426 + GFF1388 0.23 -0.0 34,427 - GFF1388 0.23 -0.7 34,427 - GFF1388 0.23 -0.0 34,485 + GFF1388 0.27 -0.5 34,485 + GFF1388 0.27 +0.2 34,486 - GFF1388 0.27 -0.3 34,486 - GFF1388 0.27 +1.1 34,762 + GFF1388 0.47 -0.5 34,762 + GFF1388 0.47 -0.5 34,830 + GFF1388 0.52 -0.6 34,831 - GFF1388 0.52 +0.3 34,834 + GFF1388 0.52 +0.8 34,835 - GFF1388 0.52 -0.1 35,034 + GFF1388 0.66 +0.8 35,049 + GFF1388 0.67 +0.0 35,050 - GFF1388 0.67 +0.1
Or see this region's nucleotide sequence