Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2002 and Echvi_2003 are separated by 111 nucleotides Echvi_2003 and Echvi_2004 overlap by 1 nucleotides Echvi_2004 and Echvi_2005 are separated by 96 nucleotides Echvi_2005 and Echvi_2006 are separated by 87 nucleotides
Echvi_2002: Echvi_2002 - threonine synthase, at 2,353,849 to 2,355,141
_2002
Echvi_2003: Echvi_2003 - Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component, at 2,355,253 to 2,357,106
_2003
Echvi_2004: Echvi_2004 - Predicted transcriptional regulator, at 2,357,106 to 2,357,480
_2004
Echvi_2005: Echvi_2005 - hypothetical protein, at 2,357,577 to 2,357,699
_2005
Echvi_2006: Echvi_2006 - Uncharacterized conserved protein, at 2,357,787 to 2,358,548
_2006
Position (kb)
2355
2356
2357
2358 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2354.285 kb on - strand, within Echvi_2002 at 2354.358 kb on + strand, within Echvi_2002 at 2354.472 kb on + strand, within Echvi_2002 at 2354.472 kb on + strand, within Echvi_2002 at 2354.473 kb on - strand, within Echvi_2002 at 2354.473 kb on - strand, within Echvi_2002 at 2354.473 kb on - strand, within Echvi_2002 at 2354.473 kb on - strand, within Echvi_2002 at 2354.519 kb on + strand, within Echvi_2002 at 2354.525 kb on - strand, within Echvi_2002 at 2354.530 kb on + strand, within Echvi_2002 at 2354.537 kb on - strand, within Echvi_2002 at 2354.537 kb on - strand, within Echvi_2002 at 2354.537 kb on - strand, within Echvi_2002 at 2354.538 kb on + strand, within Echvi_2002 at 2354.538 kb on + strand, within Echvi_2002 at 2354.739 kb on + strand, within Echvi_2002 at 2354.739 kb on + strand, within Echvi_2002 at 2354.791 kb on + strand, within Echvi_2002 at 2354.791 kb on + strand, within Echvi_2002 at 2354.792 kb on - strand, within Echvi_2002 at 2354.792 kb on - strand, within Echvi_2002 at 2354.823 kb on - strand, within Echvi_2002 at 2354.920 kb on + strand, within Echvi_2002 at 2354.930 kb on + strand, within Echvi_2002 at 2354.931 kb on - strand, within Echvi_2002 at 2355.122 kb on - strand at 2355.140 kb on - strand at 2355.142 kb on + strand at 2355.156 kb on - strand at 2355.240 kb on + strand at 2355.359 kb on - strand at 2355.359 kb on - strand at 2355.409 kb on - strand at 2355.514 kb on + strand, within Echvi_2003 at 2355.544 kb on + strand, within Echvi_2003 at 2355.553 kb on + strand, within Echvi_2003 at 2355.641 kb on - strand, within Echvi_2003 at 2355.742 kb on + strand, within Echvi_2003 at 2355.742 kb on + strand, within Echvi_2003 at 2355.743 kb on - strand, within Echvi_2003 at 2355.743 kb on - strand, within Echvi_2003 at 2355.860 kb on + strand, within Echvi_2003 at 2355.864 kb on + strand, within Echvi_2003 at 2355.864 kb on + strand, within Echvi_2003 at 2355.865 kb on - strand, within Echvi_2003 at 2355.865 kb on - strand, within Echvi_2003 at 2355.872 kb on + strand, within Echvi_2003 at 2355.878 kb on + strand, within Echvi_2003 at 2355.878 kb on + strand, within Echvi_2003 at 2355.878 kb on + strand, within Echvi_2003 at 2355.879 kb on - strand, within Echvi_2003 at 2355.960 kb on + strand, within Echvi_2003 at 2355.961 kb on - strand, within Echvi_2003 at 2355.989 kb on + strand, within Echvi_2003 at 2356.013 kb on - strand, within Echvi_2003 at 2356.016 kb on + strand, within Echvi_2003 at 2356.017 kb on - strand, within Echvi_2003 at 2356.017 kb on - strand, within Echvi_2003 at 2356.031 kb on - strand, within Echvi_2003 at 2356.031 kb on - strand, within Echvi_2003 at 2356.108 kb on + strand, within Echvi_2003 at 2356.366 kb on + strand, within Echvi_2003 at 2356.367 kb on - strand, within Echvi_2003 at 2356.401 kb on - strand, within Echvi_2003 at 2356.437 kb on + strand, within Echvi_2003 at 2356.464 kb on + strand, within Echvi_2003 at 2356.514 kb on + strand, within Echvi_2003 at 2356.514 kb on + strand, within Echvi_2003 at 2356.563 kb on + strand, within Echvi_2003 at 2356.563 kb on + strand, within Echvi_2003 at 2356.563 kb on + strand, within Echvi_2003 at 2356.563 kb on + strand, within Echvi_2003 at 2356.565 kb on + strand, within Echvi_2003 at 2356.565 kb on + strand, within Echvi_2003 at 2356.565 kb on + strand, within Echvi_2003 at 2356.566 kb on - strand, within Echvi_2003 at 2356.566 kb on - strand, within Echvi_2003 at 2356.642 kb on + strand, within Echvi_2003 at 2356.642 kb on + strand, within Echvi_2003 at 2356.643 kb on - strand, within Echvi_2003 at 2356.681 kb on + strand, within Echvi_2003 at 2356.708 kb on + strand, within Echvi_2003 at 2356.794 kb on + strand, within Echvi_2003 at 2356.795 kb on - strand, within Echvi_2003 at 2356.795 kb on - strand, within Echvi_2003 at 2356.821 kb on + strand, within Echvi_2003 at 2356.822 kb on - strand, within Echvi_2003 at 2356.908 kb on + strand, within Echvi_2003 at 2356.936 kb on + strand at 2356.977 kb on + strand at 2356.977 kb on + strand at 2356.978 kb on - strand at 2356.978 kb on - strand at 2356.994 kb on - strand at 2357.085 kb on + strand at 2357.107 kb on + strand at 2357.143 kb on - strand at 2357.143 kb on - strand at 2357.151 kb on + strand, within Echvi_2004 at 2357.151 kb on + strand, within Echvi_2004 at 2357.152 kb on - strand, within Echvi_2004 at 2357.152 kb on - strand, within Echvi_2004 at 2357.152 kb on - strand, within Echvi_2004 at 2357.284 kb on + strand, within Echvi_2004 at 2357.284 kb on + strand, within Echvi_2004 at 2357.284 kb on + strand, within Echvi_2004 at 2357.284 kb on + strand, within Echvi_2004 at 2357.284 kb on + strand, within Echvi_2004 at 2357.284 kb on + strand, within Echvi_2004 at 2357.284 kb on + strand, within Echvi_2004 at 2357.285 kb on - strand, within Echvi_2004 at 2357.285 kb on - strand, within Echvi_2004 at 2357.285 kb on - strand, within Echvi_2004 at 2357.285 kb on - strand, within Echvi_2004 at 2357.285 kb on - strand, within Echvi_2004 at 2357.285 kb on - strand, within Echvi_2004 at 2357.288 kb on + strand, within Echvi_2004 at 2357.288 kb on + strand, within Echvi_2004 at 2357.357 kb on + strand, within Echvi_2004 at 2357.409 kb on + strand, within Echvi_2004 at 2357.410 kb on - strand, within Echvi_2004 at 2357.471 kb on + strand at 2357.472 kb on - strand at 2357.474 kb on - strand at 2357.474 kb on - strand at 2357.489 kb on + strand at 2357.528 kb on + strand at 2357.592 kb on + strand, within Echvi_2005 at 2357.671 kb on + strand, within Echvi_2005 at 2357.672 kb on - strand, within Echvi_2005 at 2357.681 kb on + strand, within Echvi_2005 at 2357.681 kb on + strand, within Echvi_2005 at 2357.682 kb on - strand, within Echvi_2005 at 2357.682 kb on - strand, within Echvi_2005 at 2357.686 kb on - strand, within Echvi_2005 at 2357.724 kb on + strand at 2357.786 kb on + strand at 2357.804 kb on + strand at 2357.804 kb on + strand at 2357.907 kb on + strand, within Echvi_2006 at 2357.908 kb on - strand, within Echvi_2006 at 2357.936 kb on + strand, within Echvi_2006 at 2357.963 kb on + strand, within Echvi_2006
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 2,354,285 - Echvi_2002 0.34 -1.8 2,354,358 + Echvi_2002 0.39 -0.6 2,354,472 + Echvi_2002 0.48 -0.9 2,354,472 + Echvi_2002 0.48 -2.6 2,354,473 - Echvi_2002 0.48 -3.2 2,354,473 - Echvi_2002 0.48 -3.3 2,354,473 - Echvi_2002 0.48 -3.9 2,354,473 - Echvi_2002 0.48 -1.1 2,354,519 + Echvi_2002 0.52 -1.1 2,354,525 - Echvi_2002 0.52 -1.5 2,354,530 + Echvi_2002 0.53 -2.2 2,354,537 - Echvi_2002 0.53 -2.4 2,354,537 - Echvi_2002 0.53 -1.6 2,354,537 - Echvi_2002 0.53 -1.1 2,354,538 + Echvi_2002 0.53 -2.7 2,354,538 + Echvi_2002 0.53 -2.8 2,354,739 + Echvi_2002 0.69 -1.3 2,354,739 + Echvi_2002 0.69 -2.7 2,354,791 + Echvi_2002 0.73 -0.5 2,354,791 + Echvi_2002 0.73 -2.6 2,354,792 - Echvi_2002 0.73 -1.1 2,354,792 - Echvi_2002 0.73 -1.0 2,354,823 - Echvi_2002 0.75 -2.0 2,354,920 + Echvi_2002 0.83 -1.7 2,354,930 + Echvi_2002 0.84 -3.0 2,354,931 - Echvi_2002 0.84 -2.4 2,355,122 - -2.8 2,355,140 - -0.3 2,355,142 + +0.9 2,355,156 - -0.3 2,355,240 + +0.1 2,355,359 - +1.3 2,355,359 - -0.8 2,355,409 - -0.2 2,355,514 + Echvi_2003 0.14 -0.6 2,355,544 + Echvi_2003 0.16 -0.8 2,355,553 + Echvi_2003 0.16 +0.2 2,355,641 - Echvi_2003 0.21 +0.5 2,355,742 + Echvi_2003 0.26 -0.6 2,355,742 + Echvi_2003 0.26 -0.0 2,355,743 - Echvi_2003 0.26 -0.5 2,355,743 - Echvi_2003 0.26 -0.5 2,355,860 + Echvi_2003 0.33 +1.3 2,355,864 + Echvi_2003 0.33 +0.5 2,355,864 + Echvi_2003 0.33 -0.2 2,355,865 - Echvi_2003 0.33 +1.7 2,355,865 - Echvi_2003 0.33 -2.8 2,355,872 + Echvi_2003 0.33 -1.1 2,355,878 + Echvi_2003 0.34 +0.4 2,355,878 + Echvi_2003 0.34 -0.0 2,355,878 + Echvi_2003 0.34 +0.9 2,355,879 - Echvi_2003 0.34 -0.5 2,355,960 + Echvi_2003 0.38 -1.7 2,355,961 - Echvi_2003 0.38 -0.0 2,355,989 + Echvi_2003 0.40 +0.7 2,356,013 - Echvi_2003 0.41 -0.7 2,356,016 + Echvi_2003 0.41 -1.0 2,356,017 - Echvi_2003 0.41 -0.6 2,356,017 - Echvi_2003 0.41 +0.5 2,356,031 - Echvi_2003 0.42 +0.5 2,356,031 - Echvi_2003 0.42 +0.4 2,356,108 + Echvi_2003 0.46 +0.2 2,356,366 + Echvi_2003 0.60 +0.1 2,356,367 - Echvi_2003 0.60 +0.5 2,356,401 - Echvi_2003 0.62 +0.5 2,356,437 + Echvi_2003 0.64 +0.7 2,356,464 + Echvi_2003 0.65 +0.8 2,356,514 + Echvi_2003 0.68 -0.1 2,356,514 + Echvi_2003 0.68 +0.4 2,356,563 + Echvi_2003 0.71 -1.3 2,356,563 + Echvi_2003 0.71 -0.0 2,356,563 + Echvi_2003 0.71 -0.5 2,356,563 + Echvi_2003 0.71 -2.5 2,356,565 + Echvi_2003 0.71 +0.2 2,356,565 + Echvi_2003 0.71 -1.8 2,356,565 + Echvi_2003 0.71 -0.4 2,356,566 - Echvi_2003 0.71 -0.3 2,356,566 - Echvi_2003 0.71 -0.6 2,356,642 + Echvi_2003 0.75 -0.9 2,356,642 + Echvi_2003 0.75 -1.3 2,356,643 - Echvi_2003 0.75 +0.3 2,356,681 + Echvi_2003 0.77 -0.2 2,356,708 + Echvi_2003 0.78 +0.8 2,356,794 + Echvi_2003 0.83 -0.1 2,356,795 - Echvi_2003 0.83 -0.3 2,356,795 - Echvi_2003 0.83 +0.9 2,356,821 + Echvi_2003 0.85 -1.1 2,356,822 - Echvi_2003 0.85 -1.6 2,356,908 + Echvi_2003 0.89 +0.2 2,356,936 + -1.1 2,356,977 + +1.2 2,356,977 + +0.7 2,356,978 - -0.0 2,356,978 - +1.1 2,356,994 - -0.5 2,357,085 + -0.1 2,357,107 + +0.6 2,357,143 - -0.4 2,357,143 - +0.5 2,357,151 + Echvi_2004 0.12 -1.5 2,357,151 + Echvi_2004 0.12 -0.2 2,357,152 - Echvi_2004 0.12 +0.0 2,357,152 - Echvi_2004 0.12 +0.5 2,357,152 - Echvi_2004 0.12 -0.1 2,357,284 + Echvi_2004 0.47 +1.4 2,357,284 + Echvi_2004 0.47 -1.3 2,357,284 + Echvi_2004 0.47 -0.4 2,357,284 + Echvi_2004 0.47 -0.1 2,357,284 + Echvi_2004 0.47 +0.9 2,357,284 + Echvi_2004 0.47 +0.6 2,357,284 + Echvi_2004 0.47 +0.3 2,357,285 - Echvi_2004 0.48 -0.7 2,357,285 - Echvi_2004 0.48 -1.6 2,357,285 - Echvi_2004 0.48 +0.1 2,357,285 - Echvi_2004 0.48 -1.5 2,357,285 - Echvi_2004 0.48 -1.4 2,357,285 - Echvi_2004 0.48 -0.5 2,357,288 + Echvi_2004 0.49 -0.0 2,357,288 + Echvi_2004 0.49 -0.5 2,357,357 + Echvi_2004 0.67 -0.8 2,357,409 + Echvi_2004 0.81 -0.4 2,357,410 - Echvi_2004 0.81 +0.3 2,357,471 + +0.8 2,357,472 - +1.4 2,357,474 - +2.7 2,357,474 - -0.4 2,357,489 + -0.0 2,357,528 + +0.3 2,357,592 + Echvi_2005 0.12 +1.1 2,357,671 + Echvi_2005 0.76 +0.6 2,357,672 - Echvi_2005 0.77 -0.0 2,357,681 + Echvi_2005 0.85 +1.0 2,357,681 + Echvi_2005 0.85 -0.3 2,357,682 - Echvi_2005 0.85 -0.3 2,357,682 - Echvi_2005 0.85 +0.4 2,357,686 - Echvi_2005 0.89 +0.0 2,357,724 + +1.4 2,357,786 + -0.8 2,357,804 + +0.5 2,357,804 + -1.6 2,357,907 + Echvi_2006 0.16 +1.4 2,357,908 - Echvi_2006 0.16 -1.0 2,357,936 + Echvi_2006 0.20 -1.3 2,357,963 + Echvi_2006 0.23 +0.9
Or see this region's nucleotide sequence