Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0558 and Echvi_0559 are separated by 498 nucleotides Echvi_0559 and Echvi_0560 are separated by 154 nucleotides Echvi_0560 and Echvi_0561 are separated by 145 nucleotides
Echvi_0558: Echvi_0558 - periplasmic serine protease, Do/DeqQ family, at 629,981 to 631,468
_0558
Echvi_0559: Echvi_0559 - hypothetical protein, at 631,967 to 633,889
_0559
Echvi_0560: Echvi_0560 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 634,044 to 634,712
_0560
Echvi_0561: Echvi_0561 - Sugar kinases, ribokinase family, at 634,858 to 635,865
_0561
Position (kb) 631
632
633
634 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 631.000 kb on + strand, within Echvi_0558 at 631.001 kb on - strand, within Echvi_0558 at 631.015 kb on - strand, within Echvi_0558 at 631.048 kb on - strand, within Echvi_0558 at 631.097 kb on + strand, within Echvi_0558 at 631.098 kb on - strand, within Echvi_0558 at 631.127 kb on - strand, within Echvi_0558 at 631.156 kb on + strand, within Echvi_0558 at 631.214 kb on - strand, within Echvi_0558 at 631.269 kb on + strand, within Echvi_0558 at 631.270 kb on - strand, within Echvi_0558 at 631.278 kb on + strand, within Echvi_0558 at 631.278 kb on + strand, within Echvi_0558 at 631.279 kb on - strand, within Echvi_0558 at 631.279 kb on - strand, within Echvi_0558 at 631.350 kb on + strand at 631.350 kb on + strand at 631.390 kb on + strand at 631.466 kb on + strand at 631.466 kb on + strand at 631.467 kb on - strand at 631.467 kb on - strand at 631.467 kb on - strand at 631.470 kb on - strand at 631.479 kb on - strand at 631.487 kb on + strand at 631.492 kb on - strand at 631.492 kb on - strand at 631.492 kb on - strand at 631.492 kb on - strand at 631.530 kb on - strand at 631.534 kb on + strand at 631.535 kb on - strand at 631.535 kb on - strand at 631.536 kb on + strand at 631.536 kb on + strand at 631.536 kb on + strand at 631.542 kb on - strand at 631.567 kb on + strand at 631.568 kb on - strand at 631.623 kb on - strand at 631.653 kb on - strand at 631.877 kb on + strand at 631.877 kb on + strand at 631.924 kb on + strand at 631.951 kb on - strand at 631.954 kb on - strand at 631.963 kb on + strand at 632.084 kb on + strand at 632.120 kb on - strand at 632.120 kb on - strand at 632.243 kb on - strand, within Echvi_0559 at 632.262 kb on + strand, within Echvi_0559 at 632.262 kb on + strand, within Echvi_0559 at 632.263 kb on - strand, within Echvi_0559 at 632.263 kb on - strand, within Echvi_0559 at 632.430 kb on - strand, within Echvi_0559 at 632.520 kb on + strand, within Echvi_0559 at 632.520 kb on + strand, within Echvi_0559 at 632.520 kb on + strand, within Echvi_0559 at 632.521 kb on - strand, within Echvi_0559 at 632.524 kb on + strand, within Echvi_0559 at 632.525 kb on - strand, within Echvi_0559 at 632.525 kb on - strand, within Echvi_0559 at 632.525 kb on - strand, within Echvi_0559 at 632.525 kb on - strand, within Echvi_0559 at 632.525 kb on - strand, within Echvi_0559 at 632.529 kb on + strand, within Echvi_0559 at 632.530 kb on - strand, within Echvi_0559 at 632.530 kb on - strand, within Echvi_0559 at 632.581 kb on + strand, within Echvi_0559 at 632.582 kb on - strand, within Echvi_0559 at 632.582 kb on - strand, within Echvi_0559 at 632.616 kb on + strand, within Echvi_0559 at 632.617 kb on - strand, within Echvi_0559 at 632.638 kb on + strand, within Echvi_0559 at 632.672 kb on - strand, within Echvi_0559 at 632.685 kb on - strand, within Echvi_0559 at 632.761 kb on - strand, within Echvi_0559 at 632.761 kb on - strand, within Echvi_0559 at 632.811 kb on + strand, within Echvi_0559 at 632.960 kb on + strand, within Echvi_0559 at 632.979 kb on - strand, within Echvi_0559 at 633.005 kb on - strand, within Echvi_0559 at 633.055 kb on + strand, within Echvi_0559 at 633.066 kb on + strand, within Echvi_0559 at 633.069 kb on + strand, within Echvi_0559 at 633.069 kb on + strand, within Echvi_0559 at 633.069 kb on + strand, within Echvi_0559 at 633.069 kb on + strand, within Echvi_0559 at 633.070 kb on - strand, within Echvi_0559 at 633.088 kb on + strand, within Echvi_0559 at 633.089 kb on - strand, within Echvi_0559 at 633.111 kb on + strand, within Echvi_0559 at 633.112 kb on - strand, within Echvi_0559 at 633.146 kb on + strand, within Echvi_0559 at 633.147 kb on - strand, within Echvi_0559 at 633.147 kb on - strand, within Echvi_0559 at 633.147 kb on - strand, within Echvi_0559 at 633.147 kb on - strand, within Echvi_0559 at 633.149 kb on + strand, within Echvi_0559 at 633.149 kb on + strand, within Echvi_0559 at 633.149 kb on + strand, within Echvi_0559 at 633.150 kb on - strand, within Echvi_0559 at 633.150 kb on - strand, within Echvi_0559 at 633.150 kb on - strand, within Echvi_0559 at 633.154 kb on + strand, within Echvi_0559 at 633.154 kb on + strand, within Echvi_0559 at 633.154 kb on + strand, within Echvi_0559 at 633.155 kb on - strand, within Echvi_0559 at 633.155 kb on - strand, within Echvi_0559 at 633.155 kb on - strand, within Echvi_0559 at 633.155 kb on - strand, within Echvi_0559 at 633.182 kb on + strand, within Echvi_0559 at 633.182 kb on + strand, within Echvi_0559 at 633.185 kb on - strand, within Echvi_0559 at 633.247 kb on - strand, within Echvi_0559 at 633.277 kb on - strand, within Echvi_0559 at 633.315 kb on - strand, within Echvi_0559 at 633.414 kb on - strand, within Echvi_0559 at 633.424 kb on - strand, within Echvi_0559 at 633.431 kb on - strand, within Echvi_0559 at 633.431 kb on - strand, within Echvi_0559 at 633.432 kb on + strand, within Echvi_0559 at 633.432 kb on + strand, within Echvi_0559 at 633.433 kb on - strand, within Echvi_0559 at 633.442 kb on - strand, within Echvi_0559 at 633.454 kb on + strand, within Echvi_0559 at 633.570 kb on + strand, within Echvi_0559 at 633.570 kb on + strand, within Echvi_0559 at 633.596 kb on - strand, within Echvi_0559 at 633.600 kb on + strand, within Echvi_0559 at 633.600 kb on + strand, within Echvi_0559 at 633.601 kb on - strand, within Echvi_0559 at 633.711 kb on + strand at 633.712 kb on - strand at 633.712 kb on - strand at 633.712 kb on - strand at 633.787 kb on - strand at 633.825 kb on + strand at 633.831 kb on + strand at 633.831 kb on + strand at 633.832 kb on - strand at 633.834 kb on - strand at 633.904 kb on + strand at 633.904 kb on + strand at 633.904 kb on + strand at 633.904 kb on + strand at 633.920 kb on - strand at 633.933 kb on + strand at 633.933 kb on + strand at 633.933 kb on + strand at 633.933 kb on + strand at 634.003 kb on - strand at 634.003 kb on - strand at 634.014 kb on + strand at 634.018 kb on + strand at 634.018 kb on + strand at 634.023 kb on + strand at 634.023 kb on + strand at 634.023 kb on + strand at 634.023 kb on + strand at 634.023 kb on + strand at 634.024 kb on - strand at 634.025 kb on + strand at 634.025 kb on + strand at 634.026 kb on - strand at 634.069 kb on + strand at 634.069 kb on + strand at 634.069 kb on + strand at 634.163 kb on + strand, within Echvi_0560 at 634.164 kb on - strand, within Echvi_0560 at 634.260 kb on + strand, within Echvi_0560 at 634.260 kb on + strand, within Echvi_0560 at 634.260 kb on + strand, within Echvi_0560 at 634.260 kb on + strand, within Echvi_0560 at 634.261 kb on - strand, within Echvi_0560 at 634.261 kb on - strand, within Echvi_0560 at 634.261 kb on - strand, within Echvi_0560 at 634.262 kb on + strand, within Echvi_0560 at 634.262 kb on + strand, within Echvi_0560 at 634.263 kb on - strand, within Echvi_0560 at 634.263 kb on - strand, within Echvi_0560 at 634.263 kb on - strand, within Echvi_0560 at 634.263 kb on - strand, within Echvi_0560 at 634.266 kb on + strand, within Echvi_0560 at 634.266 kb on + strand, within Echvi_0560 at 634.266 kb on + strand, within Echvi_0560 at 634.266 kb on + strand, within Echvi_0560 at 634.266 kb on + strand, within Echvi_0560 at 634.266 kb on + strand, within Echvi_0560 at 634.267 kb on - strand, within Echvi_0560 at 634.267 kb on - strand, within Echvi_0560 at 634.267 kb on - strand, within Echvi_0560 at 634.269 kb on + strand, within Echvi_0560 at 634.270 kb on - strand, within Echvi_0560 at 634.270 kb on - strand, within Echvi_0560 at 634.293 kb on + strand, within Echvi_0560 at 634.293 kb on + strand, within Echvi_0560 at 634.293 kb on + strand, within Echvi_0560 at 634.294 kb on - strand, within Echvi_0560 at 634.294 kb on - strand, within Echvi_0560 at 634.351 kb on + strand, within Echvi_0560 at 634.351 kb on + strand, within Echvi_0560 at 634.351 kb on + strand, within Echvi_0560 at 634.351 kb on + strand, within Echvi_0560 at 634.352 kb on - strand, within Echvi_0560 at 634.352 kb on - strand, within Echvi_0560 at 634.352 kb on - strand, within Echvi_0560 at 634.358 kb on + strand, within Echvi_0560 at 634.359 kb on - strand, within Echvi_0560 at 634.359 kb on - strand, within Echvi_0560 at 634.359 kb on - strand, within Echvi_0560 at 634.362 kb on + strand, within Echvi_0560 at 634.362 kb on + strand, within Echvi_0560 at 634.362 kb on + strand, within Echvi_0560 at 634.363 kb on - strand, within Echvi_0560 at 634.363 kb on - strand, within Echvi_0560 at 634.450 kb on - strand, within Echvi_0560 at 634.463 kb on - strand, within Echvi_0560 at 634.466 kb on - strand, within Echvi_0560 at 634.585 kb on + strand, within Echvi_0560 at 634.601 kb on + strand, within Echvi_0560 at 634.708 kb on - strand at 634.711 kb on - strand at 634.741 kb on - strand at 634.752 kb on + strand at 634.752 kb on + strand at 634.753 kb on - strand at 634.765 kb on - strand at 634.799 kb on + strand at 634.807 kb on + strand at 634.808 kb on - strand at 634.809 kb on + strand at 634.809 kb on + strand at 634.810 kb on - strand at 634.832 kb on + strand at 634.832 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 631,000 + Echvi_0558 0.68 +0.7 631,001 - Echvi_0558 0.69 -1.0 631,015 - Echvi_0558 0.69 -0.5 631,048 - Echvi_0558 0.72 -2.0 631,097 + Echvi_0558 0.75 +0.6 631,098 - Echvi_0558 0.75 -0.0 631,127 - Echvi_0558 0.77 +0.2 631,156 + Echvi_0558 0.79 +1.8 631,214 - Echvi_0558 0.83 +0.7 631,269 + Echvi_0558 0.87 -0.2 631,270 - Echvi_0558 0.87 -0.4 631,278 + Echvi_0558 0.87 -1.1 631,278 + Echvi_0558 0.87 +1.6 631,279 - Echvi_0558 0.87 +1.0 631,279 - Echvi_0558 0.87 -1.2 631,350 + -0.9 631,350 + -0.7 631,390 + -3.3 631,466 + +1.6 631,466 + -1.9 631,467 - +1.8 631,467 - -0.6 631,467 - +1.2 631,470 - +1.5 631,479 - +0.2 631,487 + -0.7 631,492 - -0.2 631,492 - +0.7 631,492 - +0.1 631,492 - -0.4 631,530 - -0.4 631,534 + -0.1 631,535 - -0.0 631,535 - -0.2 631,536 + +1.1 631,536 + -0.3 631,536 + -0.4 631,542 - -0.6 631,567 + +0.6 631,568 - +0.2 631,623 - +0.5 631,653 - -0.8 631,877 + +0.9 631,877 + +1.4 631,924 + -1.5 631,951 - +0.1 631,954 - +0.2 631,963 + -1.5 632,084 + -0.3 632,120 - -0.3 632,120 - -0.8 632,243 - Echvi_0559 0.14 +0.7 632,262 + Echvi_0559 0.15 +1.9 632,262 + Echvi_0559 0.15 -0.0 632,263 - Echvi_0559 0.15 -0.3 632,263 - Echvi_0559 0.15 -2.7 632,430 - Echvi_0559 0.24 -0.2 632,520 + Echvi_0559 0.29 -0.9 632,520 + Echvi_0559 0.29 -1.4 632,520 + Echvi_0559 0.29 +0.9 632,521 - Echvi_0559 0.29 +0.5 632,524 + Echvi_0559 0.29 +0.8 632,525 - Echvi_0559 0.29 +0.6 632,525 - Echvi_0559 0.29 +0.1 632,525 - Echvi_0559 0.29 -0.5 632,525 - Echvi_0559 0.29 -0.2 632,525 - Echvi_0559 0.29 +0.6 632,529 + Echvi_0559 0.29 -0.4 632,530 - Echvi_0559 0.29 +1.0 632,530 - Echvi_0559 0.29 +1.8 632,581 + Echvi_0559 0.32 +0.9 632,582 - Echvi_0559 0.32 +2.0 632,582 - Echvi_0559 0.32 +0.2 632,616 + Echvi_0559 0.34 +0.3 632,617 - Echvi_0559 0.34 +0.1 632,638 + Echvi_0559 0.35 -1.9 632,672 - Echvi_0559 0.37 -0.8 632,685 - Echvi_0559 0.37 -0.2 632,761 - Echvi_0559 0.41 +0.1 632,761 - Echvi_0559 0.41 -0.4 632,811 + Echvi_0559 0.44 +0.9 632,960 + Echvi_0559 0.52 -0.2 632,979 - Echvi_0559 0.53 +1.0 633,005 - Echvi_0559 0.54 +1.2 633,055 + Echvi_0559 0.57 -0.8 633,066 + Echvi_0559 0.57 +0.2 633,069 + Echvi_0559 0.57 +0.6 633,069 + Echvi_0559 0.57 +1.8 633,069 + Echvi_0559 0.57 -1.0 633,069 + Echvi_0559 0.57 -0.5 633,070 - Echvi_0559 0.57 +0.3 633,088 + Echvi_0559 0.58 +0.5 633,089 - Echvi_0559 0.58 +1.5 633,111 + Echvi_0559 0.59 -0.2 633,112 - Echvi_0559 0.60 +0.2 633,146 + Echvi_0559 0.61 +0.6 633,147 - Echvi_0559 0.61 +1.4 633,147 - Echvi_0559 0.61 -1.5 633,147 - Echvi_0559 0.61 +0.8 633,147 - Echvi_0559 0.61 -0.3 633,149 + Echvi_0559 0.61 +0.2 633,149 + Echvi_0559 0.61 -1.0 633,149 + Echvi_0559 0.61 +1.0 633,150 - Echvi_0559 0.62 -0.4 633,150 - Echvi_0559 0.62 -1.7 633,150 - Echvi_0559 0.62 +1.4 633,154 + Echvi_0559 0.62 -0.7 633,154 + Echvi_0559 0.62 -0.5 633,154 + Echvi_0559 0.62 +0.5 633,155 - Echvi_0559 0.62 +1.5 633,155 - Echvi_0559 0.62 -0.1 633,155 - Echvi_0559 0.62 +0.6 633,155 - Echvi_0559 0.62 +0.3 633,182 + Echvi_0559 0.63 -1.2 633,182 + Echvi_0559 0.63 +0.3 633,185 - Echvi_0559 0.63 +2.4 633,247 - Echvi_0559 0.67 +0.8 633,277 - Echvi_0559 0.68 -0.1 633,315 - Echvi_0559 0.70 -0.3 633,414 - Echvi_0559 0.75 -0.7 633,424 - Echvi_0559 0.76 +0.2 633,431 - Echvi_0559 0.76 -0.7 633,431 - Echvi_0559 0.76 +1.5 633,432 + Echvi_0559 0.76 -0.8 633,432 + Echvi_0559 0.76 +0.0 633,433 - Echvi_0559 0.76 +0.6 633,442 - Echvi_0559 0.77 -0.1 633,454 + Echvi_0559 0.77 -0.2 633,570 + Echvi_0559 0.83 -0.7 633,570 + Echvi_0559 0.83 +1.8 633,596 - Echvi_0559 0.85 +0.2 633,600 + Echvi_0559 0.85 -0.6 633,600 + Echvi_0559 0.85 -1.2 633,601 - Echvi_0559 0.85 +0.0 633,711 + -0.2 633,712 - +0.4 633,712 - +0.1 633,712 - -0.6 633,787 - -0.6 633,825 + -0.8 633,831 + -0.2 633,831 + -0.2 633,832 - +0.1 633,834 - -0.6 633,904 + -0.4 633,904 + -2.5 633,904 + +0.6 633,904 + +2.1 633,920 - -0.0 633,933 + -0.8 633,933 + -2.9 633,933 + -1.2 633,933 + +0.9 634,003 - -0.2 634,003 - +0.0 634,014 + +0.8 634,018 + +0.1 634,018 + -2.4 634,023 + -1.1 634,023 + +0.2 634,023 + -0.4 634,023 + +0.2 634,023 + +0.3 634,024 - +0.3 634,025 + +0.3 634,025 + +1.1 634,026 - -1.5 634,069 + +0.2 634,069 + -1.3 634,069 + +1.4 634,163 + Echvi_0560 0.18 +0.7 634,164 - Echvi_0560 0.18 -1.3 634,260 + Echvi_0560 0.32 -0.7 634,260 + Echvi_0560 0.32 -1.7 634,260 + Echvi_0560 0.32 -0.8 634,260 + Echvi_0560 0.32 +0.1 634,261 - Echvi_0560 0.32 -0.2 634,261 - Echvi_0560 0.32 -0.1 634,261 - Echvi_0560 0.32 +0.5 634,262 + Echvi_0560 0.33 -0.1 634,262 + Echvi_0560 0.33 +0.3 634,263 - Echvi_0560 0.33 -1.6 634,263 - Echvi_0560 0.33 +1.1 634,263 - Echvi_0560 0.33 -0.7 634,263 - Echvi_0560 0.33 -0.4 634,266 + Echvi_0560 0.33 -0.7 634,266 + Echvi_0560 0.33 +0.3 634,266 + Echvi_0560 0.33 -0.7 634,266 + Echvi_0560 0.33 -0.9 634,266 + Echvi_0560 0.33 +0.6 634,266 + Echvi_0560 0.33 -0.5 634,267 - Echvi_0560 0.33 -0.3 634,267 - Echvi_0560 0.33 -0.1 634,267 - Echvi_0560 0.33 +0.2 634,269 + Echvi_0560 0.34 +0.0 634,270 - Echvi_0560 0.34 +1.8 634,270 - Echvi_0560 0.34 +2.4 634,293 + Echvi_0560 0.37 -1.0 634,293 + Echvi_0560 0.37 +1.5 634,293 + Echvi_0560 0.37 +0.2 634,294 - Echvi_0560 0.37 -1.1 634,294 - Echvi_0560 0.37 -1.9 634,351 + Echvi_0560 0.46 -0.1 634,351 + Echvi_0560 0.46 +0.1 634,351 + Echvi_0560 0.46 +0.2 634,351 + Echvi_0560 0.46 +2.0 634,352 - Echvi_0560 0.46 +2.2 634,352 - Echvi_0560 0.46 +0.5 634,352 - Echvi_0560 0.46 -0.6 634,358 + Echvi_0560 0.47 +1.1 634,359 - Echvi_0560 0.47 +0.4 634,359 - Echvi_0560 0.47 +0.6 634,359 - Echvi_0560 0.47 +0.9 634,362 + Echvi_0560 0.48 -2.7 634,362 + Echvi_0560 0.48 +0.2 634,362 + Echvi_0560 0.48 +0.5 634,363 - Echvi_0560 0.48 -0.5 634,363 - Echvi_0560 0.48 -0.9 634,450 - Echvi_0560 0.61 -0.1 634,463 - Echvi_0560 0.63 +0.4 634,466 - Echvi_0560 0.63 +2.5 634,585 + Echvi_0560 0.81 +0.2 634,601 + Echvi_0560 0.83 -0.6 634,708 - +0.0 634,711 - -0.3 634,741 - -0.0 634,752 + -0.0 634,752 + -0.2 634,753 - -4.1 634,765 - +0.4 634,799 + -0.2 634,807 + +1.1 634,808 - +0.0 634,809 + +0.8 634,809 + -0.3 634,810 - -0.6 634,832 + +0.3 634,832 + -0.0
Or see this region's nucleotide sequence