Strain Fitness in Agrobacterium fabrum C58 around Atu6124

Experiment: L-Asparagine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Asparagine (N)
140,296	+				+0.4
140,304	+				+0.2
140,378	+				+1.6
140,386	-				-0.3
140,402	+				+1.0
140,420	-		Atu6122	0.10	-0.1
140,435	+		Atu6122	0.15	+0.9
140,436	-		Atu6122	0.16	-0.9
140,484	+		Atu6122	0.31	-0.2
140,484	+		Atu6122	0.31	+0.9
140,484	+		Atu6122	0.31	+2.3
140,492	-		Atu6122	0.33	+0.3
140,492	-		Atu6122	0.33	-1.0
140,492	-		Atu6122	0.33	+0.5
140,524	-		Atu6122	0.43	+0.0
140,524	-		Atu6122	0.43	+0.2
140,529	-		Atu6122	0.45	-0.2
140,531	-		Atu6122	0.46	-0.2
140,550	-		Atu6122	0.52	-0.4
140,586	+		Atu6122	0.63	+0.1
140,586	+		Atu6122	0.63	+2.2
140,586	+		Atu6122	0.63	-0.7
140,589	-		Atu6122	0.64	+1.6
140,591	+		Atu6122	0.65	+0.3
140,594	-		Atu6122	0.66	-1.5
140,594	-		Atu6122	0.66	-0.0
140,594	-		Atu6122	0.66	+0.9
140,594	-		Atu6122	0.66	+1.4
140,594	-		Atu6122	0.66	+0.4
140,594	-		Atu6122	0.66	+1.1
140,604	+		Atu6122	0.69	+0.8
140,621	+		Atu6122	0.74	-1.3
140,621	+		Atu6122	0.74	-0.8
140,623	+		Atu6122	0.75	-0.7
140,631	-		Atu6122	0.77	-0.2
140,661	+		Atu6122	0.87	-0.2
140,669	-		Atu6122	0.90	+0.6
140,684	-				+0.1
140,694	-				+0.7
140,710	+				+0.5
140,713	-				+0.7
140,715	-				+1.7
140,718	-				-0.1
140,718	-				+0.2
140,718	-				-0.3
140,739	+				-0.8
140,802	+				-0.6
140,804	+				+0.9
140,807	-				-0.2
140,810	-				+0.4
140,820	+				+0.3
140,822	-				+1.0
140,838	-				+1.5
140,838	-				+0.6
140,875	-				+0.6
140,885	+				+1.2
140,984	+		Atu6123	0.33	-0.2
140,992	-		Atu6123	0.35	-0.2
140,992	-		Atu6123	0.35	+0.2
140,992	-		Atu6123	0.35	-0.8
141,075	+		Atu6123	0.55	+2.2
141,082	+		Atu6123	0.57	+1.2
141,082	+		Atu6123	0.57	-0.1
141,083	-		Atu6123	0.57	+2.6
141,089	+		Atu6123	0.59	+1.1
141,090	-		Atu6123	0.59	+0.2
141,090	-		Atu6123	0.59	+1.3
141,122	+		Atu6123	0.67	-0.3
141,141	+		Atu6123	0.72	-0.4
141,141	+		Atu6123	0.72	+0.5
141,141	+		Atu6123	0.72	-1.5
141,149	-		Atu6123	0.74	+0.1
141,151	+		Atu6123	0.74	-0.5
141,286	+				+0.2
141,402	+				+0.8
141,438	+				+1.9
141,446	-				+0.5
141,446	-				+0.3
141,446	-				-0.2
141,446	-				+0.5
141,482	+		Atu6124	0.12	+0.5
141,490	-		Atu6124	0.12	-0.0
141,536	-		Atu6124	0.15	+0.8
141,562	-		Atu6124	0.16	+1.5
141,666	-		Atu6124	0.21	+0.1
141,785	+		Atu6124	0.27	-0.2
141,785	+		Atu6124	0.27	-0.7
141,819	+		Atu6124	0.29	-0.7
141,829	+		Atu6124	0.29	-0.7
141,837	-		Atu6124	0.30	+1.0
141,837	-		Atu6124	0.30	+0.1
141,884	+		Atu6124	0.32	-0.2
141,892	-		Atu6124	0.33	+1.7
141,953	-		Atu6124	0.36	+0.1
141,953	-		Atu6124	0.36	+0.9
141,976	+		Atu6124	0.37	+0.4
141,984	-		Atu6124	0.37	+2.5
141,986	+		Atu6124	0.37	-0.9
142,005	-		Atu6124	0.38	+2.2
142,011	+		Atu6124	0.39	-0.5
142,011	+		Atu6124	0.39	+0.0
142,011	+		Atu6124	0.39	-1.3
142,019	-		Atu6124	0.39	-0.3
142,047	+		Atu6124	0.40	+0.5
142,093	+		Atu6124	0.43	+0.8
142,093	+		Atu6124	0.43	+1.1
142,093	+		Atu6124	0.43	-0.5
142,142	+		Atu6124	0.45	+0.3
142,163	+		Atu6124	0.46	+0.8
142,196	+		Atu6124	0.48	+1.5
142,248	-		Atu6124	0.51	-0.8
142,260	+		Atu6124	0.51	+1.4
142,285	+		Atu6124	0.52	+0.7
142,345	+		Atu6124	0.55	-0.0
142,412	+		Atu6124	0.59	+0.2
142,448	+		Atu6124	0.61	+1.6
142,457	+		Atu6124	0.61	-0.8
142,544	-		Atu6124	0.66	-0.2
142,576	+		Atu6124	0.67	+0.2
142,589	-		Atu6124	0.68	+0.3
142,603	+		Atu6124	0.68	-0.2
142,663	+		Atu6124	0.72	-0.4
142,746	+		Atu6124	0.76	+0.7
142,754	-		Atu6124	0.76	+0.8
142,765	+		Atu6124	0.77	+0.3
142,786	+		Atu6124	0.78	-2.5
142,814	-		Atu6124	0.79	-0.2
142,816	+		Atu6124	0.79	+0.2
142,842	+		Atu6124	0.81	+1.9
142,850	-		Atu6124	0.81	+1.0
142,855	-		Atu6124	0.81	-0.8
142,882	+		Atu6124	0.83	+0.3
142,882	+		Atu6124	0.83	-0.6
142,882	+		Atu6124	0.83	-0.1
142,882	+		Atu6124	0.83	+0.3
142,882	+		Atu6124	0.83	+1.9
142,887	+		Atu6124	0.83	-0.3
142,890	-		Atu6124	0.83	-1.0
142,890	-		Atu6124	0.83	-1.3
142,895	-		Atu6124	0.83	-0.2
142,952	+		Atu6124	0.86	-0.0
142,960	-		Atu6124	0.87	+0.2
142,960	-		Atu6124	0.87	+0.8
142,962	+		Atu6124	0.87	-0.7
142,970	-		Atu6124	0.87	+0.5
142,981	-		Atu6124	0.88	+0.2
143,018	-		Atu6124	0.89	+0.6
143,068	+				+0.8
143,068	+				+1.7
143,068	+				+0.3
143,068	+				+2.0
143,068	+				+0.1
143,076	-				-0.8
143,076	-				+0.4
143,083	+				+1.9
143,099	+				+0.3
143,114	+				+0.1
143,243	-		Atu6125	0.13	+0.5
143,259	-		Atu6125	0.19	+0.2
143,338	+		Atu6125	0.51	+0.1
143,338	+		Atu6125	0.51	-0.1
143,343	+		Atu6125	0.53	+0.2
143,343	+		Atu6125	0.53	+0.2
143,346	-		Atu6125	0.54	+1.8
143,403	+		Atu6125	0.78	+1.4
143,430	+		Atu6125	0.89	+0.4
143,430	+		Atu6125	0.89	+0.2
143,440	+				+0.6
143,450	+				-0.4
143,458	-				-0.2
143,485	+		Atu6126	0.18	+0.9
143,485	+		Atu6126	0.18	+0.4
143,493	-		Atu6126	0.21	+0.1
143,493	-		Atu6126	0.21	+0.7
143,493	-		Atu6126	0.21	-0.9
143,493	-		Atu6126	0.21	+1.6
143,534	+		Atu6126	0.34	+0.3
143,567	+		Atu6126	0.45	+0.6
143,584	+		Atu6126	0.51	+1.5
143,585	-		Atu6126	0.52	+0.8
143,585	-		Atu6126	0.52	+0.5
143,598	+		Atu6126	0.56	+0.5
143,621	-		Atu6126	0.64	+0.2
143,621	-		Atu6126	0.64	+0.3
143,658	+		Atu6126	0.76	+1.5
143,670	+		Atu6126	0.80	-0.0
143,718	+				-0.8
143,732	+				+0.3
143,805	+				-0.1
143,805	+				+1.0
143,813	-				-0.1
143,835	+				+0.0
143,891	-				+0.8
143,916	+				+1.0
143,938	+				-0.1
144,001	+				+0.0
144,059	+				+0.5
144,059	+				-0.4
144,162	+				-0.2
144,185	+				-1.6
144,195	+				+1.5
144,218	+				+1.1