Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0579

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0578 and Echvi_0579 are separated by 513 nucleotidesEchvi_0579 and Echvi_0580 are separated by 124 nucleotides Echvi_0578: Echvi_0578 - Delta-aminolevulinic acid dehydratase, at 655,112 to 656,080 _0578 Echvi_0579: Echvi_0579 - ammonium transporter, at 656,594 to 657,904 _0579 Echvi_0580: Echvi_0580 - hypothetical protein, at 658,029 to 659,177 _0580 Position (kb) 656 657 658Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 656.100 kb on + strandat 656.570 kb on - strandat 656.593 kb on + strandat 656.609 kb on - strandat 656.617 kb on - strandat 656.629 kb on + strandat 656.682 kb on + strandat 656.690 kb on - strandat 656.692 kb on + strandat 656.692 kb on + strandat 656.728 kb on - strand, within Echvi_0579at 656.810 kb on - strand, within Echvi_0579at 656.836 kb on + strand, within Echvi_0579at 656.837 kb on - strand, within Echvi_0579at 656.868 kb on - strand, within Echvi_0579at 656.954 kb on - strand, within Echvi_0579at 656.984 kb on + strand, within Echvi_0579at 656.985 kb on - strand, within Echvi_0579at 656.985 kb on - strand, within Echvi_0579at 657.098 kb on + strand, within Echvi_0579at 657.098 kb on + strand, within Echvi_0579at 657.098 kb on + strand, within Echvi_0579at 657.099 kb on - strand, within Echvi_0579at 657.099 kb on - strand, within Echvi_0579at 657.099 kb on - strand, within Echvi_0579at 657.099 kb on - strand, within Echvi_0579at 657.099 kb on - strand, within Echvi_0579at 657.111 kb on + strand, within Echvi_0579at 657.111 kb on + strand, within Echvi_0579at 657.112 kb on - strand, within Echvi_0579at 657.118 kb on + strand, within Echvi_0579at 657.118 kb on + strand, within Echvi_0579at 657.119 kb on - strand, within Echvi_0579at 657.119 kb on - strand, within Echvi_0579at 657.187 kb on + strand, within Echvi_0579at 657.188 kb on - strand, within Echvi_0579at 657.188 kb on - strand, within Echvi_0579at 657.205 kb on - strand, within Echvi_0579at 657.233 kb on - strand, within Echvi_0579at 657.251 kb on - strand, within Echvi_0579at 657.260 kb on + strand, within Echvi_0579at 657.261 kb on - strand, within Echvi_0579at 657.261 kb on - strand, within Echvi_0579at 657.261 kb on - strand, within Echvi_0579at 657.265 kb on - strand, within Echvi_0579at 657.301 kb on - strand, within Echvi_0579at 657.301 kb on - strand, within Echvi_0579at 657.301 kb on - strand, within Echvi_0579at 657.400 kb on - strand, within Echvi_0579at 657.465 kb on + strand, within Echvi_0579at 657.470 kb on - strand, within Echvi_0579at 657.503 kb on - strand, within Echvi_0579at 657.526 kb on + strand, within Echvi_0579at 657.526 kb on + strand, within Echvi_0579at 657.568 kb on - strand, within Echvi_0579at 657.568 kb on - strand, within Echvi_0579at 657.568 kb on - strand, within Echvi_0579at 657.570 kb on + strand, within Echvi_0579at 657.589 kb on - strand, within Echvi_0579at 657.589 kb on - strand, within Echvi_0579at 657.794 kb on + strandat 657.794 kb on + strandat 657.795 kb on - strandat 657.795 kb on - strandat 657.795 kb on - strandat 657.795 kb on - strandat 657.795 kb on - strandat 657.882 kb on - strandat 657.882 kb on - strandat 657.894 kb on - strandat 657.926 kb on + strandat 657.927 kb on - strandat 657.927 kb on - strandat 657.927 kb on - strandat 657.980 kb on - strandat 657.980 kb on - strandat 658.004 kb on - strandat 658.016 kb on - strandat 658.049 kb on - strandat 658.049 kb on - strandat 658.055 kb on - strandat 658.060 kb on + strandat 658.067 kb on - strandat 658.126 kb on + strandat 658.126 kb on + strandat 658.127 kb on - strandat 658.127 kb on - strandat 658.127 kb on - strandat 658.127 kb on - strandat 658.135 kb on - strandat 658.137 kb on + strandat 658.258 kb on - strand, within Echvi_0580at 658.305 kb on - strand, within Echvi_0580at 658.352 kb on - strand, within Echvi_0580at 658.362 kb on + strand, within Echvi_0580at 658.362 kb on + strand, within Echvi_0580at 658.362 kb on + strand, within Echvi_0580at 658.362 kb on + strand, within Echvi_0580at 658.363 kb on - strand, within Echvi_0580at 658.363 kb on - strand, within Echvi_0580at 658.363 kb on - strand, within Echvi_0580at 658.364 kb on + strand, within Echvi_0580at 658.365 kb on - strand, within Echvi_0580at 658.365 kb on - strand, within Echvi_0580at 658.365 kb on - strand, within Echvi_0580at 658.368 kb on + strand, within Echvi_0580at 658.369 kb on - strand, within Echvi_0580at 658.369 kb on - strand, within Echvi_0580at 658.369 kb on - strand, within Echvi_0580at 658.398 kb on - strand, within Echvi_0580at 658.473 kb on + strand, within Echvi_0580at 658.473 kb on + strand, within Echvi_0580at 658.474 kb on - strand, within Echvi_0580at 658.474 kb on - strand, within Echvi_0580at 658.706 kb on + strand, within Echvi_0580at 658.707 kb on - strand, within Echvi_0580at 658.707 kb on - strand, within Echvi_0580at 658.783 kb on - strand, within Echvi_0580at 658.794 kb on - strand, within Echvi_0580at 658.803 kb on + strand, within Echvi_0580at 658.804 kb on - strand, within Echvi_0580at 658.804 kb on - strand, within Echvi_0580at 658.804 kb on - strand, within Echvi_0580at 658.804 kb on - strand, within Echvi_0580at 658.804 kb on - strand, within Echvi_0580at 658.805 kb on + strand, within Echvi_0580at 658.806 kb on - strand, within Echvi_0580at 658.806 kb on - strand, within Echvi_0580at 658.806 kb on - strand, within Echvi_0580at 658.806 kb on - strand, within Echvi_0580at 658.806 kb on - strand, within Echvi_0580at 658.806 kb on - strand, within Echvi_0580at 658.806 kb on - strand, within Echvi_0580at 658.878 kb on + strand, within Echvi_0580at 658.878 kb on + strand, within Echvi_0580at 658.879 kb on - strand, within Echvi_0580at 658.879 kb on - strand, within Echvi_0580at 658.897 kb on + strand, within Echvi_0580at 658.898 kb on - strand, within Echvi_0580at 658.898 kb on - strand, within Echvi_0580

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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656,100 + +2.2
656,570 - -0.1
656,593 + -1.4
656,609 - -0.7
656,617 - -0.3
656,629 + -1.1
656,682 + -1.8
656,690 - -3.4
656,692 + -1.0
656,692 + -1.4
656,728 - Echvi_0579 0.10 -2.5
656,810 - Echvi_0579 0.16 -2.1
656,836 + Echvi_0579 0.18 +1.2
656,837 - Echvi_0579 0.19 -0.1
656,868 - Echvi_0579 0.21 -1.9
656,954 - Echvi_0579 0.27 -0.4
656,984 + Echvi_0579 0.30 -0.3
656,985 - Echvi_0579 0.30 -0.1
656,985 - Echvi_0579 0.30 -2.3
657,098 + Echvi_0579 0.38 +0.6
657,098 + Echvi_0579 0.38 -1.4
657,098 + Echvi_0579 0.38 +0.0
657,099 - Echvi_0579 0.39 -2.0
657,099 - Echvi_0579 0.39 -1.7
657,099 - Echvi_0579 0.39 +0.2
657,099 - Echvi_0579 0.39 -1.4
657,099 - Echvi_0579 0.39 -2.5
657,111 + Echvi_0579 0.39 +0.6
657,111 + Echvi_0579 0.39 -1.1
657,112 - Echvi_0579 0.40 +1.2
657,118 + Echvi_0579 0.40 -1.3
657,118 + Echvi_0579 0.40 +0.9
657,119 - Echvi_0579 0.40 -0.7
657,119 - Echvi_0579 0.40 -0.2
657,187 + Echvi_0579 0.45 -0.1
657,188 - Echvi_0579 0.45 -1.0
657,188 - Echvi_0579 0.45 -1.7
657,205 - Echvi_0579 0.47 -2.8
657,233 - Echvi_0579 0.49 -0.2
657,251 - Echvi_0579 0.50 -1.1
657,260 + Echvi_0579 0.51 -0.3
657,261 - Echvi_0579 0.51 -1.1
657,261 - Echvi_0579 0.51 -2.9
657,261 - Echvi_0579 0.51 +0.3
657,265 - Echvi_0579 0.51 -1.3
657,301 - Echvi_0579 0.54 -0.4
657,301 - Echvi_0579 0.54 -1.5
657,301 - Echvi_0579 0.54 -2.3
657,400 - Echvi_0579 0.61 -1.0
657,465 + Echvi_0579 0.66 -1.7
657,470 - Echvi_0579 0.67 -2.5
657,503 - Echvi_0579 0.69 -0.7
657,526 + Echvi_0579 0.71 -2.5
657,526 + Echvi_0579 0.71 +0.6
657,568 - Echvi_0579 0.74 +1.2
657,568 - Echvi_0579 0.74 +0.4
657,568 - Echvi_0579 0.74 -1.5
657,570 + Echvi_0579 0.74 -0.2
657,589 - Echvi_0579 0.76 -2.1
657,589 - Echvi_0579 0.76 -0.3
657,794 + -1.3
657,794 + -1.9
657,795 - -1.0
657,795 - -0.3
657,795 - -0.3
657,795 - -1.9
657,795 - -0.5
657,882 - -2.2
657,882 - -1.4
657,894 - -2.8
657,926 + +0.0
657,927 - -2.3
657,927 - -0.3
657,927 - -2.1
657,980 - -1.5
657,980 - +0.6
658,004 - -0.6
658,016 - -1.7
658,049 - -1.3
658,049 - +1.3
658,055 - +0.4
658,060 + -1.0
658,067 - -1.3
658,126 + -0.6
658,126 + -0.4
658,127 - -1.2
658,127 - -0.6
658,127 - +0.0
658,127 - -0.8
658,135 - +0.0
658,137 + -0.5
658,258 - Echvi_0580 0.20 -2.2
658,305 - Echvi_0580 0.24 +0.5
658,352 - Echvi_0580 0.28 -1.0
658,362 + Echvi_0580 0.29 -1.7
658,362 + Echvi_0580 0.29 -1.6
658,362 + Echvi_0580 0.29 -2.6
658,362 + Echvi_0580 0.29 -0.3
658,363 - Echvi_0580 0.29 -1.6
658,363 - Echvi_0580 0.29 -1.6
658,363 - Echvi_0580 0.29 -0.7
658,364 + Echvi_0580 0.29 -1.3
658,365 - Echvi_0580 0.29 -2.8
658,365 - Echvi_0580 0.29 -0.3
658,365 - Echvi_0580 0.29 -1.4
658,368 + Echvi_0580 0.30 +0.6
658,369 - Echvi_0580 0.30 -0.9
658,369 - Echvi_0580 0.30 -0.1
658,369 - Echvi_0580 0.30 -1.1
658,398 - Echvi_0580 0.32 +0.6
658,473 + Echvi_0580 0.39 -1.6
658,473 + Echvi_0580 0.39 +0.6
658,474 - Echvi_0580 0.39 -1.1
658,474 - Echvi_0580 0.39 -1.8
658,706 + Echvi_0580 0.59 -0.0
658,707 - Echvi_0580 0.59 +1.8
658,707 - Echvi_0580 0.59 +0.4
658,783 - Echvi_0580 0.66 -2.0
658,794 - Echvi_0580 0.67 -1.0
658,803 + Echvi_0580 0.67 -0.1
658,804 - Echvi_0580 0.67 -0.6
658,804 - Echvi_0580 0.67 +0.1
658,804 - Echvi_0580 0.67 -1.7
658,804 - Echvi_0580 0.67 -1.4
658,804 - Echvi_0580 0.67 -0.5
658,805 + Echvi_0580 0.68 -1.0
658,806 - Echvi_0580 0.68 +0.6
658,806 - Echvi_0580 0.68 -0.2
658,806 - Echvi_0580 0.68 -1.8
658,806 - Echvi_0580 0.68 -1.8
658,806 - Echvi_0580 0.68 +0.2
658,806 - Echvi_0580 0.68 -1.5
658,806 - Echvi_0580 0.68 -1.7
658,878 + Echvi_0580 0.74 +0.2
658,878 + Echvi_0580 0.74 +1.4
658,879 - Echvi_0580 0.74 -2.6
658,879 - Echvi_0580 0.74 -1.1
658,897 + Echvi_0580 0.76 -0.1
658,898 - Echvi_0580 0.76 -2.0
658,898 - Echvi_0580 0.76 -1.1

Or see this region's nucleotide sequence