Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0126

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0124 and Echvi_0125 are separated by 22 nucleotidesEchvi_0125 and Echvi_0126 are separated by 9 nucleotidesEchvi_0126 and Echvi_0127 are separated by 104 nucleotidesEchvi_0127 and Echvi_0128 are separated by 73 nucleotidesEchvi_0128 and Echvi_0129 are separated by 20 nucleotides Echvi_0124: Echvi_0124 - Aspartate/tyrosine/aromatic aminotransferase, at 124,289 to 125,449 _0124 Echvi_0125: Echvi_0125 - Prephenate dehydrogenase, at 125,472 to 126,320 _0125 Echvi_0126: Echvi_0126 - ABC-type Fe3+-hydroxamate transport system, periplasmic component, at 126,330 to 127,097 _0126 Echvi_0127: Echvi_0127 - hypothetical protein, at 127,202 to 127,438 _0127 Echvi_0128: Echvi_0128 - hypothetical protein, at 127,512 to 127,607 _0128 Echvi_0129: Echvi_0129 - hypothetical protein, at 127,628 to 128,110 _0129 Position (kb) 126 127 128Strain fitness (log2 ratio) -2 -1 0 1 2at 125.369 kb on + strandat 125.369 kb on + strandat 125.369 kb on + strandat 125.447 kb on + strandat 125.448 kb on - strandat 125.471 kb on + strandat 125.471 kb on + strandat 125.472 kb on - strandat 125.472 kb on - strandat 125.551 kb on + strandat 125.551 kb on + strandat 125.552 kb on - strandat 125.572 kb on + strand, within Echvi_0125at 125.678 kb on + strand, within Echvi_0125at 125.714 kb on + strand, within Echvi_0125at 125.714 kb on + strand, within Echvi_0125at 125.715 kb on - strand, within Echvi_0125at 125.715 kb on - strand, within Echvi_0125at 125.762 kb on + strand, within Echvi_0125at 125.762 kb on + strand, within Echvi_0125at 125.763 kb on - strand, within Echvi_0125at 125.763 kb on - strand, within Echvi_0125at 125.835 kb on + strand, within Echvi_0125at 125.835 kb on + strand, within Echvi_0125at 125.835 kb on + strand, within Echvi_0125at 125.836 kb on - strand, within Echvi_0125at 126.039 kb on - strand, within Echvi_0125at 126.158 kb on + strand, within Echvi_0125at 126.159 kb on - strand, within Echvi_0125at 126.182 kb on + strand, within Echvi_0125at 126.204 kb on + strand, within Echvi_0125at 126.312 kb on - strandat 126.326 kb on - strandat 126.342 kb on - strandat 126.377 kb on - strandat 126.501 kb on + strand, within Echvi_0126at 126.616 kb on + strand, within Echvi_0126at 126.616 kb on + strand, within Echvi_0126at 126.616 kb on + strand, within Echvi_0126at 126.616 kb on + strand, within Echvi_0126at 126.617 kb on - strand, within Echvi_0126at 126.617 kb on - strand, within Echvi_0126at 126.617 kb on - strand, within Echvi_0126at 126.638 kb on - strand, within Echvi_0126at 126.711 kb on - strand, within Echvi_0126at 126.777 kb on - strand, within Echvi_0126at 126.827 kb on + strand, within Echvi_0126at 126.827 kb on + strand, within Echvi_0126at 126.827 kb on + strand, within Echvi_0126at 127.057 kb on - strandat 127.057 kb on - strandat 127.057 kb on - strandat 127.079 kb on + strandat 127.079 kb on + strandat 127.079 kb on + strandat 127.079 kb on + strandat 127.079 kb on + strandat 127.079 kb on + strandat 127.079 kb on + strandat 127.079 kb on + strandat 127.080 kb on - strandat 127.080 kb on - strandat 127.081 kb on + strandat 127.081 kb on + strandat 127.082 kb on - strandat 127.082 kb on - strandat 127.088 kb on + strandat 127.185 kb on + strandat 127.193 kb on + strandat 127.198 kb on + strandat 127.198 kb on + strandat 127.200 kb on + strandat 127.240 kb on + strand, within Echvi_0127at 127.250 kb on + strand, within Echvi_0127at 127.280 kb on - strand, within Echvi_0127at 127.424 kb on - strandat 127.424 kb on - strandat 127.536 kb on - strand, within Echvi_0128at 127.650 kb on - strandat 127.659 kb on + strandat 127.659 kb on + strandat 127.660 kb on - strandat 127.660 kb on - strandat 127.660 kb on - strandat 127.844 kb on + strand, within Echvi_0129at 127.844 kb on + strand, within Echvi_0129at 127.847 kb on - strand, within Echvi_0129at 127.847 kb on - strand, within Echvi_0129at 127.873 kb on - strand, within Echvi_0129at 127.942 kb on + strand, within Echvi_0129at 127.942 kb on + strand, within Echvi_0129at 127.943 kb on - strand, within Echvi_0129at 127.943 kb on - strand, within Echvi_0129at 127.943 kb on - strand, within Echvi_0129at 127.943 kb on - strand, within Echvi_0129at 127.992 kb on - strand, within Echvi_0129at 128.015 kb on - strand, within Echvi_0129at 128.026 kb on + strand, within Echvi_0129at 128.045 kb on - strand, within Echvi_0129

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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125,369 + -0.6
125,369 + -1.7
125,369 + -0.3
125,447 + +0.4
125,448 - +1.2
125,471 + -0.8
125,471 + -0.2
125,472 - +0.1
125,472 - +1.0
125,551 + -1.0
125,551 + -0.1
125,552 - -0.5
125,572 + Echvi_0125 0.12 -1.1
125,678 + Echvi_0125 0.24 +0.5
125,714 + Echvi_0125 0.29 +0.0
125,714 + Echvi_0125 0.29 +0.0
125,715 - Echvi_0125 0.29 -0.3
125,715 - Echvi_0125 0.29 +0.7
125,762 + Echvi_0125 0.34 -0.3
125,762 + Echvi_0125 0.34 +0.3
125,763 - Echvi_0125 0.34 -1.6
125,763 - Echvi_0125 0.34 +1.0
125,835 + Echvi_0125 0.43 -2.3
125,835 + Echvi_0125 0.43 -0.9
125,835 + Echvi_0125 0.43 +0.2
125,836 - Echvi_0125 0.43 -0.3
126,039 - Echvi_0125 0.67 +0.5
126,158 + Echvi_0125 0.81 -0.4
126,159 - Echvi_0125 0.81 -0.7
126,182 + Echvi_0125 0.84 -0.4
126,204 + Echvi_0125 0.86 +0.0
126,312 - -0.3
126,326 - -0.4
126,342 - +0.2
126,377 - -0.9
126,501 + Echvi_0126 0.22 +0.7
126,616 + Echvi_0126 0.37 +0.8
126,616 + Echvi_0126 0.37 -0.4
126,616 + Echvi_0126 0.37 +0.1
126,616 + Echvi_0126 0.37 +0.8
126,617 - Echvi_0126 0.37 +0.6
126,617 - Echvi_0126 0.37 +0.6
126,617 - Echvi_0126 0.37 +0.3
126,638 - Echvi_0126 0.40 +0.2
126,711 - Echvi_0126 0.50 +0.1
126,777 - Echvi_0126 0.58 -0.1
126,827 + Echvi_0126 0.65 +2.1
126,827 + Echvi_0126 0.65 -0.3
126,827 + Echvi_0126 0.65 -1.6
127,057 - -1.5
127,057 - -0.6
127,057 - +1.9
127,079 + +0.1
127,079 + +0.4
127,079 + -0.5
127,079 + -0.1
127,079 + +0.7
127,079 + -0.2
127,079 + +1.0
127,079 + +0.0
127,080 - +0.7
127,080 - +0.4
127,081 + -0.2
127,081 + +0.3
127,082 - -1.7
127,082 - +1.2
127,088 + +0.3
127,185 + -0.6
127,193 + -1.2
127,198 + -0.5
127,198 + +0.9
127,200 + +1.0
127,240 + Echvi_0127 0.16 -0.3
127,250 + Echvi_0127 0.20 +0.6
127,280 - Echvi_0127 0.33 -0.3
127,424 - +0.7
127,424 - -0.8
127,536 - Echvi_0128 0.25 +0.1
127,650 - +0.1
127,659 + -0.1
127,659 + -0.6
127,660 - +0.3
127,660 - +0.7
127,660 - +1.4
127,844 + Echvi_0129 0.45 -0.2
127,844 + Echvi_0129 0.45 +0.6
127,847 - Echvi_0129 0.45 +0.3
127,847 - Echvi_0129 0.45 +0.2
127,873 - Echvi_0129 0.51 +0.4
127,942 + Echvi_0129 0.65 -1.0
127,942 + Echvi_0129 0.65 +1.9
127,943 - Echvi_0129 0.65 +2.2
127,943 - Echvi_0129 0.65 +0.1
127,943 - Echvi_0129 0.65 +0.5
127,943 - Echvi_0129 0.65 +0.2
127,992 - Echvi_0129 0.75 +0.9
128,015 - Echvi_0129 0.80 -0.2
128,026 + Echvi_0129 0.82 -0.7
128,045 - Echvi_0129 0.86 +0.1

Or see this region's nucleotide sequence