Experiment: m.b. Lomefloxacin 0.004 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_20055 and CA264_20060 are separated by 69 nucleotides CA264_20060 and CA264_20065 are separated by 50 nucleotides CA264_20065 and CA264_20070 overlap by 4 nucleotides
CA264_20055: CA264_20055 - peptidase M41, at 4,621,910 to 4,624,033
_20055
CA264_20060: CA264_20060 - ribosome silencing factor RsfS, at 4,624,103 to 4,624,477
_20060
CA264_20065: CA264_20065 - biotin--[acetyl-CoA-carboxylase] ligase, at 4,624,528 to 4,625,277
_20065
CA264_20070: CA264_20070 - hypothetical protein, at 4,625,274 to 4,625,846
_20070
Position (kb)
4624
4625 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4623.800 kb on + strand, within CA264_20055 at 4623.902 kb on + strand at 4624.042 kb on - strand at 4624.042 kb on - strand at 4624.124 kb on + strand at 4624.124 kb on + strand at 4624.193 kb on + strand, within CA264_20060 at 4624.194 kb on - strand, within CA264_20060 at 4624.197 kb on - strand, within CA264_20060 at 4624.340 kb on + strand, within CA264_20060 at 4624.499 kb on + strand at 4624.500 kb on - strand at 4624.521 kb on + strand at 4624.524 kb on + strand at 4624.525 kb on - strand at 4624.525 kb on - strand at 4624.527 kb on + strand at 4624.527 kb on + strand at 4624.527 kb on + strand at 4624.528 kb on - strand at 4625.272 kb on - strand at 4625.385 kb on + strand, within CA264_20070
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM remove 4,623,800 + CA264_20055 0.89 -2.1 4,623,902 + +0.7 4,624,042 - -0.8 4,624,042 - +0.1 4,624,124 + -1.0 4,624,124 + -0.2 4,624,193 + CA264_20060 0.24 -0.9 4,624,194 - CA264_20060 0.24 +1.5 4,624,197 - CA264_20060 0.25 -2.9 4,624,340 + CA264_20060 0.63 -1.0 4,624,499 + -0.6 4,624,500 - -3.0 4,624,521 + -0.0 4,624,524 + -0.6 4,624,525 - +0.2 4,624,525 - -0.1 4,624,527 + -0.5 4,624,527 + -0.8 4,624,527 + -0.6 4,624,528 - -1.4 4,625,272 - -0.9 4,625,385 + CA264_20070 0.19 +0.3
Or see this region's nucleotide sequence