Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19605

Experiment: m.b. Lomefloxacin 0.004 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19600 and CA264_19605 are separated by 652 nucleotidesCA264_19605 and CA264_19610 are separated by 36 nucleotidesCA264_19610 and CA264_19615 are separated by 193 nucleotides CA264_19600: CA264_19600 - aldehyde dehydrogenase family protein, at 4,527,931 to 4,529,508 _19600 CA264_19605: CA264_19605 - RNA polymerase, at 4,530,161 to 4,530,718 _19605 CA264_19610: CA264_19610 - hypothetical protein, at 4,530,755 to 4,531,387 _19610 CA264_19615: CA264_19615 - hypothetical protein, at 4,531,581 to 4,532,540 _19615 Position (kb) 4530 4531Strain fitness (log2 ratio) -2 -1 0 1at 4529.184 kb on + strand, within CA264_19600at 4529.184 kb on + strand, within CA264_19600at 4529.425 kb on + strandat 4529.510 kb on - strandat 4529.547 kb on + strandat 4529.547 kb on + strandat 4529.547 kb on + strandat 4529.548 kb on - strandat 4529.553 kb on + strandat 4529.554 kb on - strandat 4529.600 kb on - strandat 4529.609 kb on - strandat 4529.617 kb on - strandat 4529.668 kb on + strandat 4529.669 kb on - strandat 4529.699 kb on + strandat 4529.716 kb on - strandat 4529.716 kb on - strandat 4529.753 kb on + strandat 4529.753 kb on + strandat 4529.834 kb on + strandat 4530.002 kb on - strandat 4530.051 kb on + strandat 4530.082 kb on + strandat 4530.154 kb on + strandat 4530.186 kb on + strandat 4530.187 kb on - strandat 4530.245 kb on + strand, within CA264_19605at 4530.246 kb on - strand, within CA264_19605at 4530.254 kb on + strand, within CA264_19605at 4530.254 kb on + strand, within CA264_19605at 4530.254 kb on + strand, within CA264_19605at 4530.265 kb on + strand, within CA264_19605at 4530.266 kb on - strand, within CA264_19605at 4530.299 kb on + strand, within CA264_19605at 4530.362 kb on + strand, within CA264_19605at 4530.363 kb on - strand, within CA264_19605at 4530.363 kb on - strand, within CA264_19605at 4530.419 kb on - strand, within CA264_19605at 4530.522 kb on + strand, within CA264_19605at 4530.522 kb on + strand, within CA264_19605at 4530.544 kb on - strand, within CA264_19605at 4530.584 kb on + strand, within CA264_19605at 4530.584 kb on + strand, within CA264_19605at 4530.729 kb on + strandat 4530.736 kb on + strandat 4530.745 kb on + strandat 4530.745 kb on + strandat 4530.748 kb on + strandat 4530.748 kb on + strandat 4530.748 kb on + strandat 4530.748 kb on + strandat 4530.748 kb on + strandat 4530.749 kb on - strandat 4530.859 kb on + strand, within CA264_19610at 4531.336 kb on - strandat 4531.348 kb on + strandat 4531.349 kb on - strandat 4531.349 kb on - strandat 4531.352 kb on - strandat 4531.360 kb on + strandat 4531.360 kb on + strandat 4531.591 kb on + strandat 4531.591 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM
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4,529,184 + CA264_19600 0.79 +0.3
4,529,184 + CA264_19600 0.79 -0.5
4,529,425 + -0.2
4,529,510 - -0.6
4,529,547 + -0.7
4,529,547 + -1.1
4,529,547 + -0.4
4,529,548 - -1.0
4,529,553 + -0.7
4,529,554 - -0.6
4,529,600 - -0.8
4,529,609 - -0.4
4,529,617 - -0.2
4,529,668 + -0.9
4,529,669 - -0.2
4,529,699 + -0.2
4,529,716 - +1.4
4,529,716 - -0.8
4,529,753 + -0.9
4,529,753 + -1.7
4,529,834 + -0.3
4,530,002 - +0.5
4,530,051 + -0.5
4,530,082 + +0.1
4,530,154 + -1.2
4,530,186 + -1.2
4,530,187 - -0.3
4,530,245 + CA264_19605 0.15 -0.4
4,530,246 - CA264_19605 0.15 -0.2
4,530,254 + CA264_19605 0.17 -0.3
4,530,254 + CA264_19605 0.17 -0.8
4,530,254 + CA264_19605 0.17 -0.6
4,530,265 + CA264_19605 0.19 -0.3
4,530,266 - CA264_19605 0.19 -0.5
4,530,299 + CA264_19605 0.25 -1.3
4,530,362 + CA264_19605 0.36 -0.8
4,530,363 - CA264_19605 0.36 -0.7
4,530,363 - CA264_19605 0.36 -0.3
4,530,419 - CA264_19605 0.46 -0.6
4,530,522 + CA264_19605 0.65 -0.6
4,530,522 + CA264_19605 0.65 -2.5
4,530,544 - CA264_19605 0.69 -1.3
4,530,584 + CA264_19605 0.76 -0.8
4,530,584 + CA264_19605 0.76 -0.2
4,530,729 + -2.4
4,530,736 + +0.2
4,530,745 + -1.7
4,530,745 + +0.4
4,530,748 + -0.5
4,530,748 + -0.6
4,530,748 + -0.9
4,530,748 + -1.3
4,530,748 + -0.9
4,530,749 - +0.8
4,530,859 + CA264_19610 0.16 -1.5
4,531,336 - -1.0
4,531,348 + +0.0
4,531,349 - -1.2
4,531,349 - -1.5
4,531,352 - -1.6
4,531,360 + -0.7
4,531,360 + -0.9
4,531,591 + +0.2
4,531,591 + -2.2

Or see this region's nucleotide sequence