Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14845

Experiment: m.b. Lomefloxacin 0.004 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_14840 and CA264_14845 are separated by 183 nucleotidesCA264_14845 and CA264_14850 are separated by 240 nucleotides CA264_14840: CA264_14840 - hypothetical protein, at 3,485,201 to 3,486,928 _14840 CA264_14845: CA264_14845 - magnesium chelatase, at 3,487,112 to 3,488,005 _14845 CA264_14850: CA264_14850 - hypothetical protein, at 3,488,246 to 3,488,827 _14850 Position (kb) 3487 3488 3489Strain fitness (log2 ratio) -2 -1 0 1 2at 3486.112 kb on + strand, within CA264_14840at 3486.116 kb on + strand, within CA264_14840at 3486.116 kb on + strand, within CA264_14840at 3486.117 kb on - strand, within CA264_14840at 3486.117 kb on - strand, within CA264_14840at 3486.127 kb on - strand, within CA264_14840at 3486.148 kb on + strand, within CA264_14840at 3486.156 kb on + strand, within CA264_14840at 3486.157 kb on - strand, within CA264_14840at 3486.195 kb on + strand, within CA264_14840at 3486.205 kb on + strand, within CA264_14840at 3486.217 kb on - strand, within CA264_14840at 3486.223 kb on + strand, within CA264_14840at 3486.230 kb on - strand, within CA264_14840at 3486.271 kb on - strand, within CA264_14840at 3486.274 kb on + strand, within CA264_14840at 3486.274 kb on + strand, within CA264_14840at 3486.278 kb on + strand, within CA264_14840at 3486.278 kb on + strand, within CA264_14840at 3486.278 kb on + strand, within CA264_14840at 3486.319 kb on + strand, within CA264_14840at 3486.319 kb on + strand, within CA264_14840at 3486.352 kb on - strand, within CA264_14840at 3486.355 kb on + strand, within CA264_14840at 3486.360 kb on + strand, within CA264_14840at 3486.402 kb on + strand, within CA264_14840at 3486.432 kb on + strand, within CA264_14840at 3486.433 kb on - strand, within CA264_14840at 3486.433 kb on - strand, within CA264_14840at 3486.433 kb on - strand, within CA264_14840at 3486.433 kb on - strand, within CA264_14840at 3486.433 kb on - strand, within CA264_14840at 3486.433 kb on - strand, within CA264_14840at 3486.456 kb on - strand, within CA264_14840at 3486.470 kb on + strand, within CA264_14840at 3486.520 kb on + strand, within CA264_14840at 3486.520 kb on + strand, within CA264_14840at 3486.521 kb on - strand, within CA264_14840at 3486.521 kb on - strand, within CA264_14840at 3486.529 kb on - strand, within CA264_14840at 3486.531 kb on + strand, within CA264_14840at 3486.532 kb on - strand, within CA264_14840at 3486.586 kb on - strand, within CA264_14840at 3486.588 kb on + strand, within CA264_14840at 3486.589 kb on - strand, within CA264_14840at 3486.616 kb on - strand, within CA264_14840at 3486.616 kb on - strand, within CA264_14840at 3486.641 kb on - strand, within CA264_14840at 3486.695 kb on - strand, within CA264_14840at 3486.704 kb on - strand, within CA264_14840at 3486.704 kb on - strand, within CA264_14840at 3486.810 kb on - strandat 3486.814 kb on + strandat 3486.814 kb on + strandat 3486.815 kb on - strandat 3486.831 kb on + strandat 3486.839 kb on - strandat 3486.847 kb on + strandat 3486.847 kb on + strandat 3486.848 kb on - strandat 3486.848 kb on - strandat 3486.878 kb on - strandat 3486.937 kb on - strandat 3486.937 kb on - strandat 3487.020 kb on + strandat 3487.020 kb on + strandat 3487.021 kb on - strandat 3487.024 kb on + strandat 3487.046 kb on - strandat 3487.098 kb on - strandat 3487.104 kb on + strandat 3487.105 kb on - strandat 3487.105 kb on - strandat 3487.177 kb on - strandat 3487.221 kb on + strand, within CA264_14845at 3487.222 kb on - strand, within CA264_14845at 3487.222 kb on - strand, within CA264_14845at 3487.472 kb on - strand, within CA264_14845at 3487.474 kb on + strand, within CA264_14845at 3487.475 kb on - strand, within CA264_14845at 3487.475 kb on - strand, within CA264_14845at 3487.495 kb on + strand, within CA264_14845at 3487.510 kb on + strand, within CA264_14845at 3487.510 kb on + strand, within CA264_14845at 3487.535 kb on + strand, within CA264_14845at 3487.587 kb on - strand, within CA264_14845at 3487.599 kb on + strand, within CA264_14845at 3487.599 kb on + strand, within CA264_14845at 3487.600 kb on - strand, within CA264_14845at 3487.636 kb on - strand, within CA264_14845at 3487.717 kb on - strand, within CA264_14845at 3487.900 kb on - strand, within CA264_14845at 3487.900 kb on - strand, within CA264_14845at 3488.038 kb on - strandat 3488.042 kb on + strandat 3488.104 kb on - strandat 3488.150 kb on - strandat 3488.170 kb on + strandat 3488.179 kb on + strandat 3488.179 kb on + strandat 3488.179 kb on + strandat 3488.180 kb on - strandat 3488.221 kb on + strandat 3488.222 kb on - strandat 3488.224 kb on + strandat 3488.224 kb on + strandat 3488.245 kb on + strandat 3488.262 kb on + strandat 3488.284 kb on + strandat 3488.422 kb on - strand, within CA264_14850at 3488.454 kb on + strand, within CA264_14850at 3488.455 kb on - strand, within CA264_14850at 3488.459 kb on + strand, within CA264_14850at 3488.460 kb on - strand, within CA264_14850at 3488.490 kb on + strand, within CA264_14850at 3488.490 kb on + strand, within CA264_14850at 3488.490 kb on + strand, within CA264_14850at 3488.490 kb on + strand, within CA264_14850at 3488.490 kb on + strand, within CA264_14850at 3488.491 kb on - strand, within CA264_14850at 3488.499 kb on + strand, within CA264_14850at 3488.499 kb on + strand, within CA264_14850at 3488.499 kb on + strand, within CA264_14850at 3488.504 kb on + strand, within CA264_14850at 3488.511 kb on + strand, within CA264_14850at 3488.511 kb on + strand, within CA264_14850at 3488.511 kb on + strand, within CA264_14850at 3488.512 kb on - strand, within CA264_14850at 3488.512 kb on - strand, within CA264_14850at 3488.516 kb on + strand, within CA264_14850at 3488.520 kb on + strand, within CA264_14850at 3488.520 kb on + strand, within CA264_14850at 3488.520 kb on + strand, within CA264_14850at 3488.521 kb on - strand, within CA264_14850at 3488.521 kb on - strand, within CA264_14850at 3488.521 kb on - strand, within CA264_14850at 3488.526 kb on + strand, within CA264_14850at 3488.527 kb on - strand, within CA264_14850at 3488.561 kb on + strand, within CA264_14850at 3488.561 kb on + strand, within CA264_14850at 3488.562 kb on - strand, within CA264_14850at 3488.656 kb on + strand, within CA264_14850at 3488.664 kb on + strand, within CA264_14850at 3488.665 kb on - strand, within CA264_14850at 3488.669 kb on + strand, within CA264_14850at 3488.670 kb on - strand, within CA264_14850at 3488.750 kb on + strand, within CA264_14850at 3488.751 kb on - strand, within CA264_14850at 3488.791 kb on + strandat 3488.791 kb on + strandat 3488.791 kb on + strandat 3488.791 kb on + strandat 3488.792 kb on - strandat 3488.808 kb on - strandat 3488.810 kb on - strandat 3488.810 kb on - strandat 3488.830 kb on + strandat 3488.837 kb on + strandat 3488.840 kb on + strandat 3488.841 kb on - strandat 3488.841 kb on - strandat 3488.841 kb on - strandat 3488.847 kb on + strandat 3488.848 kb on - strandat 3488.892 kb on + strandat 3488.893 kb on - strandat 3488.904 kb on + strandat 3488.914 kb on + strandat 3488.914 kb on + strandat 3488.914 kb on + strandat 3488.914 kb on + strandat 3488.914 kb on + strandat 3488.914 kb on + strandat 3488.915 kb on - strandat 3488.915 kb on - strandat 3488.946 kb on + strandat 3488.946 kb on + strandat 3488.947 kb on - strandat 3488.947 kb on - strandat 3488.947 kb on - strandat 3488.948 kb on + strandat 3488.951 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM
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3,486,112 + CA264_14840 0.53 +0.5
3,486,116 + CA264_14840 0.53 +0.5
3,486,116 + CA264_14840 0.53 +0.3
3,486,117 - CA264_14840 0.53 -0.0
3,486,117 - CA264_14840 0.53 +0.2
3,486,127 - CA264_14840 0.54 +0.7
3,486,148 + CA264_14840 0.55 +0.2
3,486,156 + CA264_14840 0.55 -0.1
3,486,157 - CA264_14840 0.55 -0.0
3,486,195 + CA264_14840 0.58 -0.1
3,486,205 + CA264_14840 0.58 -1.0
3,486,217 - CA264_14840 0.59 -0.1
3,486,223 + CA264_14840 0.59 +1.2
3,486,230 - CA264_14840 0.60 +0.1
3,486,271 - CA264_14840 0.62 -0.6
3,486,274 + CA264_14840 0.62 +0.4
3,486,274 + CA264_14840 0.62 -1.3
3,486,278 + CA264_14840 0.62 -0.6
3,486,278 + CA264_14840 0.62 +0.4
3,486,278 + CA264_14840 0.62 +0.4
3,486,319 + CA264_14840 0.65 +0.5
3,486,319 + CA264_14840 0.65 +0.6
3,486,352 - CA264_14840 0.67 -0.4
3,486,355 + CA264_14840 0.67 +0.3
3,486,360 + CA264_14840 0.67 +0.0
3,486,402 + CA264_14840 0.70 +1.7
3,486,432 + CA264_14840 0.71 +1.0
3,486,433 - CA264_14840 0.71 -0.3
3,486,433 - CA264_14840 0.71 -0.1
3,486,433 - CA264_14840 0.71 -0.3
3,486,433 - CA264_14840 0.71 +1.8
3,486,433 - CA264_14840 0.71 -0.1
3,486,433 - CA264_14840 0.71 +0.7
3,486,456 - CA264_14840 0.73 -0.5
3,486,470 + CA264_14840 0.73 +0.1
3,486,520 + CA264_14840 0.76 -0.1
3,486,520 + CA264_14840 0.76 -1.0
3,486,521 - CA264_14840 0.76 -0.0
3,486,521 - CA264_14840 0.76 +0.6
3,486,529 - CA264_14840 0.77 -0.1
3,486,531 + CA264_14840 0.77 +0.5
3,486,532 - CA264_14840 0.77 +0.3
3,486,586 - CA264_14840 0.80 +0.1
3,486,588 + CA264_14840 0.80 +0.8
3,486,589 - CA264_14840 0.80 -0.6
3,486,616 - CA264_14840 0.82 +0.5
3,486,616 - CA264_14840 0.82 +2.2
3,486,641 - CA264_14840 0.83 -0.6
3,486,695 - CA264_14840 0.86 -0.6
3,486,704 - CA264_14840 0.87 +0.5
3,486,704 - CA264_14840 0.87 +0.8
3,486,810 - -0.0
3,486,814 + -0.2
3,486,814 + -1.9
3,486,815 - -0.1
3,486,831 + -0.1
3,486,839 - -0.2
3,486,847 + -0.8
3,486,847 + -1.5
3,486,848 - -0.2
3,486,848 - -0.1
3,486,878 - -1.1
3,486,937 - -0.2
3,486,937 - -0.6
3,487,020 + -0.3
3,487,020 + -0.4
3,487,021 - -0.8
3,487,024 + -0.8
3,487,046 - -0.6
3,487,098 - +0.1
3,487,104 + -0.5
3,487,105 - +0.9
3,487,105 - -0.1
3,487,177 - -0.4
3,487,221 + CA264_14845 0.12 -1.1
3,487,222 - CA264_14845 0.12 +0.6
3,487,222 - CA264_14845 0.12 -0.4
3,487,472 - CA264_14845 0.40 -0.6
3,487,474 + CA264_14845 0.40 -1.2
3,487,475 - CA264_14845 0.41 -0.1
3,487,475 - CA264_14845 0.41 -0.4
3,487,495 + CA264_14845 0.43 -0.6
3,487,510 + CA264_14845 0.45 -0.5
3,487,510 + CA264_14845 0.45 -0.4
3,487,535 + CA264_14845 0.47 -1.2
3,487,587 - CA264_14845 0.53 -0.2
3,487,599 + CA264_14845 0.54 -0.6
3,487,599 + CA264_14845 0.54 -1.6
3,487,600 - CA264_14845 0.55 +0.2
3,487,636 - CA264_14845 0.59 +0.0
3,487,717 - CA264_14845 0.68 -0.6
3,487,900 - CA264_14845 0.88 -0.3
3,487,900 - CA264_14845 0.88 -0.2
3,488,038 - +1.8
3,488,042 + -0.8
3,488,104 - -1.0
3,488,150 - -0.9
3,488,170 + -0.9
3,488,179 + -0.9
3,488,179 + -0.4
3,488,179 + -1.4
3,488,180 - -0.9
3,488,221 + -0.1
3,488,222 - -0.7
3,488,224 + +0.8
3,488,224 + -0.0
3,488,245 + -1.1
3,488,262 + -0.4
3,488,284 + -0.2
3,488,422 - CA264_14850 0.30 -0.9
3,488,454 + CA264_14850 0.36 +0.2
3,488,455 - CA264_14850 0.36 -1.4
3,488,459 + CA264_14850 0.37 -0.2
3,488,460 - CA264_14850 0.37 -0.5
3,488,490 + CA264_14850 0.42 -0.1
3,488,490 + CA264_14850 0.42 -0.8
3,488,490 + CA264_14850 0.42 -1.2
3,488,490 + CA264_14850 0.42 +0.6
3,488,490 + CA264_14850 0.42 -0.5
3,488,491 - CA264_14850 0.42 -0.1
3,488,499 + CA264_14850 0.43 -0.1
3,488,499 + CA264_14850 0.43 -0.3
3,488,499 + CA264_14850 0.43 -0.0
3,488,504 + CA264_14850 0.44 -0.6
3,488,511 + CA264_14850 0.46 -0.1
3,488,511 + CA264_14850 0.46 +0.4
3,488,511 + CA264_14850 0.46 -0.3
3,488,512 - CA264_14850 0.46 -0.1
3,488,512 - CA264_14850 0.46 -1.1
3,488,516 + CA264_14850 0.46 -0.8
3,488,520 + CA264_14850 0.47 -0.8
3,488,520 + CA264_14850 0.47 -0.5
3,488,520 + CA264_14850 0.47 -2.2
3,488,521 - CA264_14850 0.47 +0.2
3,488,521 - CA264_14850 0.47 -2.0
3,488,521 - CA264_14850 0.47 -0.1
3,488,526 + CA264_14850 0.48 +0.6
3,488,527 - CA264_14850 0.48 +1.8
3,488,561 + CA264_14850 0.54 +0.8
3,488,561 + CA264_14850 0.54 +0.1
3,488,562 - CA264_14850 0.54 -1.2
3,488,656 + CA264_14850 0.70 +0.4
3,488,664 + CA264_14850 0.72 -0.6
3,488,665 - CA264_14850 0.72 -0.7
3,488,669 + CA264_14850 0.73 -0.4
3,488,670 - CA264_14850 0.73 -1.0
3,488,750 + CA264_14850 0.87 -0.2
3,488,751 - CA264_14850 0.87 -1.9
3,488,791 + -0.3
3,488,791 + -0.3
3,488,791 + -0.3
3,488,791 + +0.2
3,488,792 - -2.0
3,488,808 - -0.8
3,488,810 - -0.4
3,488,810 - -1.7
3,488,830 + -0.6
3,488,837 + -0.2
3,488,840 + -0.0
3,488,841 - -0.2
3,488,841 - -0.8
3,488,841 - +0.4
3,488,847 + -2.4
3,488,848 - +1.4
3,488,892 + -1.4
3,488,893 - -0.3
3,488,904 + -1.1
3,488,914 + -0.8
3,488,914 + -0.2
3,488,914 + -0.1
3,488,914 + +1.2
3,488,914 + -0.7
3,488,914 + -0.2
3,488,915 - +0.2
3,488,915 - -1.4
3,488,946 + -0.2
3,488,946 + +0.1
3,488,947 - -2.3
3,488,947 - -1.2
3,488,947 - +0.0
3,488,948 + -1.1
3,488,951 - -1.4

Or see this region's nucleotide sequence