Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14015

Experiment: m.b. Lomefloxacin 0.004 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_14010 and CA264_14015 are separated by 20 nucleotidesCA264_14015 and CA264_14020 are separated by 455 nucleotides CA264_14010: CA264_14010 - carbohydrate kinase, at 3,280,428 to 3,281,459 _14010 CA264_14015: CA264_14015 - bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase, at 3,281,480 to 3,282,151 _14015 CA264_14020: CA264_14020 - hypothetical protein, at 3,282,607 to 3,284,424 _14020 Position (kb) 3281 3282 3283Strain fitness (log2 ratio) -2 -1 0 1at 3280.590 kb on + strand, within CA264_14010at 3280.595 kb on + strand, within CA264_14010at 3280.595 kb on + strand, within CA264_14010at 3280.702 kb on - strand, within CA264_14010at 3280.702 kb on - strand, within CA264_14010at 3280.746 kb on + strand, within CA264_14010at 3280.747 kb on - strand, within CA264_14010at 3280.752 kb on - strand, within CA264_14010at 3280.818 kb on + strand, within CA264_14010at 3280.818 kb on + strand, within CA264_14010at 3280.960 kb on - strand, within CA264_14010at 3280.960 kb on - strand, within CA264_14010at 3281.132 kb on - strand, within CA264_14010at 3281.180 kb on + strand, within CA264_14010at 3281.217 kb on + strand, within CA264_14010at 3281.218 kb on - strand, within CA264_14010at 3281.300 kb on + strand, within CA264_14010at 3281.317 kb on - strand, within CA264_14010at 3281.325 kb on + strand, within CA264_14010at 3281.466 kb on - strandat 3281.468 kb on - strandat 3281.479 kb on + strandat 3281.480 kb on - strandat 3281.514 kb on + strandat 3281.544 kb on - strandat 3281.545 kb on + strandat 3281.546 kb on - strandat 3281.588 kb on + strand, within CA264_14015at 3281.588 kb on + strand, within CA264_14015at 3281.589 kb on - strand, within CA264_14015at 3281.618 kb on - strand, within CA264_14015at 3281.650 kb on + strand, within CA264_14015at 3281.713 kb on - strand, within CA264_14015at 3281.738 kb on + strand, within CA264_14015at 3281.738 kb on + strand, within CA264_14015at 3281.739 kb on - strand, within CA264_14015at 3281.962 kb on + strand, within CA264_14015at 3281.998 kb on + strand, within CA264_14015at 3282.068 kb on - strand, within CA264_14015at 3282.149 kb on + strandat 3282.181 kb on + strandat 3282.289 kb on - strandat 3282.318 kb on - strandat 3282.337 kb on - strandat 3282.345 kb on + strandat 3282.346 kb on - strandat 3282.346 kb on - strandat 3282.427 kb on - strandat 3282.428 kb on + strandat 3282.429 kb on - strandat 3282.452 kb on - strandat 3282.594 kb on - strandat 3282.639 kb on - strandat 3282.755 kb on - strandat 3282.767 kb on - strandat 3282.919 kb on + strand, within CA264_14020at 3282.919 kb on + strand, within CA264_14020at 3282.946 kb on - strand, within CA264_14020at 3282.962 kb on - strand, within CA264_14020at 3282.962 kb on - strand, within CA264_14020at 3282.977 kb on - strand, within CA264_14020at 3283.046 kb on + strand, within CA264_14020at 3283.046 kb on + strand, within CA264_14020at 3283.046 kb on + strand, within CA264_14020at 3283.047 kb on - strand, within CA264_14020at 3283.047 kb on - strand, within CA264_14020at 3283.084 kb on + strand, within CA264_14020

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM
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3,280,590 + CA264_14010 0.16 -1.0
3,280,595 + CA264_14010 0.16 -1.4
3,280,595 + CA264_14010 0.16 -0.1
3,280,702 - CA264_14010 0.27 +0.1
3,280,702 - CA264_14010 0.27 -0.6
3,280,746 + CA264_14010 0.31 -0.4
3,280,747 - CA264_14010 0.31 -0.9
3,280,752 - CA264_14010 0.31 -0.3
3,280,818 + CA264_14010 0.38 -1.2
3,280,818 + CA264_14010 0.38 -0.1
3,280,960 - CA264_14010 0.52 -0.7
3,280,960 - CA264_14010 0.52 +0.8
3,281,132 - CA264_14010 0.68 -0.6
3,281,180 + CA264_14010 0.73 -0.7
3,281,217 + CA264_14010 0.76 -0.3
3,281,218 - CA264_14010 0.77 -2.1
3,281,300 + CA264_14010 0.84 +1.4
3,281,317 - CA264_14010 0.86 -0.4
3,281,325 + CA264_14010 0.87 +0.1
3,281,466 - +1.4
3,281,468 - -0.9
3,281,479 + -0.2
3,281,480 - -0.6
3,281,514 + -0.6
3,281,544 - -1.1
3,281,545 + -0.9
3,281,546 - -0.1
3,281,588 + CA264_14015 0.16 -2.1
3,281,588 + CA264_14015 0.16 -1.4
3,281,589 - CA264_14015 0.16 +0.3
3,281,618 - CA264_14015 0.21 -0.2
3,281,650 + CA264_14015 0.25 -0.9
3,281,713 - CA264_14015 0.35 -0.7
3,281,738 + CA264_14015 0.38 -1.8
3,281,738 + CA264_14015 0.38 +0.7
3,281,739 - CA264_14015 0.39 -0.0
3,281,962 + CA264_14015 0.72 -0.2
3,281,998 + CA264_14015 0.77 -0.9
3,282,068 - CA264_14015 0.88 -2.3
3,282,149 + -0.1
3,282,181 + -2.4
3,282,289 - -0.4
3,282,318 - +0.8
3,282,337 - +0.0
3,282,345 + -0.3
3,282,346 - -1.2
3,282,346 - +0.6
3,282,427 - +0.0
3,282,428 + -0.6
3,282,429 - -1.0
3,282,452 - +0.2
3,282,594 - -0.2
3,282,639 - -2.0
3,282,755 - -0.4
3,282,767 - -1.2
3,282,919 + CA264_14020 0.17 +0.6
3,282,919 + CA264_14020 0.17 -0.7
3,282,946 - CA264_14020 0.19 -0.7
3,282,962 - CA264_14020 0.20 +0.6
3,282,962 - CA264_14020 0.20 -0.6
3,282,977 - CA264_14020 0.20 -1.4
3,283,046 + CA264_14020 0.24 -1.3
3,283,046 + CA264_14020 0.24 -0.7
3,283,046 + CA264_14020 0.24 -1.8
3,283,047 - CA264_14020 0.24 -0.9
3,283,047 - CA264_14020 0.24 +0.0
3,283,084 + CA264_14020 0.26 -2.6

Or see this region's nucleotide sequence