Experiment: m.b. Lomefloxacin 0.004 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_12565 and CA264_12570 are separated by 193 nucleotides CA264_12570 and CA264_12575 are separated by 191 nucleotides CA264_12575 and CA264_12580 are separated by 51 nucleotides
CA264_12565: CA264_12565 - competence/damage-inducible protein A, at 2,931,769 to 2,933,028
_12565
CA264_12570: CA264_12570 - 2-oxoglutarate dehydrogenase, at 2,933,222 to 2,934,589
_12570
CA264_12575: CA264_12575 - hypothetical protein, at 2,934,781 to 2,935,296
_12575
CA264_12580: CA264_12580 - hypothetical protein, at 2,935,348 to 2,935,959
_12580
Position (kb)
2933
2934
2935 Strain fitness (log2 ratio)
-2
-1
0
1 at 2932.320 kb on - strand, within CA264_12565 at 2932.320 kb on - strand, within CA264_12565 at 2932.408 kb on + strand, within CA264_12565 at 2932.408 kb on + strand, within CA264_12565 at 2932.409 kb on - strand, within CA264_12565 at 2932.409 kb on - strand, within CA264_12565 at 2932.651 kb on - strand, within CA264_12565 at 2932.651 kb on - strand, within CA264_12565 at 2932.689 kb on - strand, within CA264_12565 at 2933.013 kb on + strand at 2933.013 kb on + strand at 2933.031 kb on + strand at 2933.167 kb on - strand at 2933.167 kb on - strand at 2933.167 kb on - strand at 2933.168 kb on + strand at 2933.168 kb on + strand at 2933.168 kb on + strand at 2933.169 kb on - strand at 2933.169 kb on - strand at 2933.169 kb on - strand at 2933.169 kb on - strand at 2933.173 kb on - strand at 2933.173 kb on - strand at 2933.173 kb on - strand at 2933.174 kb on + strand at 2933.212 kb on - strand at 2933.222 kb on - strand at 2933.222 kb on - strand at 2933.222 kb on - strand at 2933.233 kb on - strand at 2934.588 kb on - strand at 2934.639 kb on + strand at 2934.640 kb on - strand at 2934.640 kb on - strand at 2934.773 kb on - strand at 2934.804 kb on - strand at 2934.841 kb on + strand, within CA264_12575 at 2934.841 kb on + strand, within CA264_12575 at 2934.841 kb on + strand, within CA264_12575 at 2934.842 kb on - strand, within CA264_12575 at 2934.957 kb on - strand, within CA264_12575 at 2934.957 kb on - strand, within CA264_12575 at 2934.957 kb on - strand, within CA264_12575 at 2935.199 kb on - strand, within CA264_12575 at 2935.201 kb on + strand, within CA264_12575 at 2935.201 kb on + strand, within CA264_12575 at 2935.226 kb on - strand, within CA264_12575 at 2935.226 kb on - strand, within CA264_12575 at 2935.241 kb on - strand, within CA264_12575 at 2935.293 kb on - strand at 2935.293 kb on - strand at 2935.295 kb on - strand at 2935.295 kb on - strand at 2935.295 kb on - strand at 2935.325 kb on + strand at 2935.326 kb on - strand at 2935.326 kb on - strand at 2935.327 kb on + strand at 2935.327 kb on + strand at 2935.328 kb on - strand at 2935.332 kb on + strand at 2935.335 kb on - strand at 2935.355 kb on + strand at 2935.358 kb on + strand at 2935.358 kb on + strand at 2935.359 kb on - strand at 2935.359 kb on - strand at 2935.359 kb on - strand at 2935.412 kb on + strand, within CA264_12580 at 2935.412 kb on + strand, within CA264_12580 at 2935.413 kb on - strand, within CA264_12580 at 2935.474 kb on - strand, within CA264_12580 at 2935.573 kb on + strand, within CA264_12580 at 2935.574 kb on - strand, within CA264_12580 at 2935.574 kb on - strand, within CA264_12580
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM remove 2,932,320 - CA264_12565 0.44 -0.3 2,932,320 - CA264_12565 0.44 -0.9 2,932,408 + CA264_12565 0.51 +0.4 2,932,408 + CA264_12565 0.51 -0.8 2,932,409 - CA264_12565 0.51 +0.7 2,932,409 - CA264_12565 0.51 -0.9 2,932,651 - CA264_12565 0.70 -1.2 2,932,651 - CA264_12565 0.70 -1.9 2,932,689 - CA264_12565 0.73 +0.1 2,933,013 + -0.5 2,933,013 + +1.3 2,933,031 + -1.0 2,933,167 - -1.0 2,933,167 - -2.6 2,933,167 - -0.3 2,933,168 + -1.1 2,933,168 + -0.9 2,933,168 + -0.6 2,933,169 - +0.8 2,933,169 - +0.4 2,933,169 - +0.7 2,933,169 - -0.4 2,933,173 - +0.7 2,933,173 - +0.2 2,933,173 - -0.8 2,933,174 + -2.1 2,933,212 - -0.4 2,933,222 - -0.4 2,933,222 - -0.2 2,933,222 - -0.4 2,933,233 - +0.4 2,934,588 - +0.4 2,934,639 + +0.1 2,934,640 - -1.0 2,934,640 - -0.3 2,934,773 - -0.4 2,934,804 - +0.9 2,934,841 + CA264_12575 0.12 -0.5 2,934,841 + CA264_12575 0.12 +0.2 2,934,841 + CA264_12575 0.12 +0.3 2,934,842 - CA264_12575 0.12 +0.2 2,934,957 - CA264_12575 0.34 -0.1 2,934,957 - CA264_12575 0.34 -0.2 2,934,957 - CA264_12575 0.34 -0.4 2,935,199 - CA264_12575 0.81 -0.4 2,935,201 + CA264_12575 0.81 -0.3 2,935,201 + CA264_12575 0.81 +0.1 2,935,226 - CA264_12575 0.86 +0.3 2,935,226 - CA264_12575 0.86 -1.8 2,935,241 - CA264_12575 0.89 +1.7 2,935,293 - -0.8 2,935,293 - -0.4 2,935,295 - +0.3 2,935,295 - -0.5 2,935,295 - +0.4 2,935,325 + -0.9 2,935,326 - -1.6 2,935,326 - +0.7 2,935,327 + -0.5 2,935,327 + -0.7 2,935,328 - +1.1 2,935,332 + -0.4 2,935,335 - -0.3 2,935,355 + -0.1 2,935,358 + -0.7 2,935,358 + -0.2 2,935,359 - +0.4 2,935,359 - +1.0 2,935,359 - -0.5 2,935,412 + CA264_12580 0.10 -1.5 2,935,412 + CA264_12580 0.10 -0.5 2,935,413 - CA264_12580 0.11 -0.4 2,935,474 - CA264_12580 0.21 -0.8 2,935,573 + CA264_12580 0.37 -1.3 2,935,574 - CA264_12580 0.37 -0.2 2,935,574 - CA264_12580 0.37 -0.8
Or see this region's nucleotide sequence