Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_12435

Experiment: m.b. Lomefloxacin 0.004 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_12430 and CA264_12435 are separated by 2 nucleotidesCA264_12435 and CA264_12440 overlap by 1 nucleotidesCA264_12440 and CA264_12445 overlap by 4 nucleotides CA264_12430: CA264_12430 - nucleotidyltransferase, at 2,895,385 to 2,896,431 _12430 CA264_12435: CA264_12435 - GlcNAc-PI de-N-acetylase, at 2,896,434 to 2,897,105 _12435 CA264_12440: CA264_12440 - methionyl-tRNA formyltransferase, at 2,897,105 to 2,897,986 _12440 CA264_12445: CA264_12445 - UDP-N-acetylglucosamine 2-epimerase (hydrolyzing), at 2,897,983 to 2,899,137 _12445 Position (kb) 2896 2897 2898Strain fitness (log2 ratio) -3 -2 -1 0 1at 2895.448 kb on + strandat 2895.549 kb on - strand, within CA264_12430at 2895.571 kb on - strand, within CA264_12430at 2895.575 kb on + strand, within CA264_12430at 2895.594 kb on - strand, within CA264_12430at 2895.600 kb on + strand, within CA264_12430at 2895.600 kb on + strand, within CA264_12430at 2895.600 kb on + strand, within CA264_12430at 2895.602 kb on + strand, within CA264_12430at 2895.602 kb on + strand, within CA264_12430at 2895.602 kb on + strand, within CA264_12430at 2895.603 kb on - strand, within CA264_12430at 2895.664 kb on + strand, within CA264_12430at 2895.670 kb on + strand, within CA264_12430at 2895.750 kb on + strand, within CA264_12430at 2895.750 kb on + strand, within CA264_12430at 2895.754 kb on + strand, within CA264_12430at 2895.782 kb on + strandat 2895.803 kb on - strand, within CA264_12430at 2895.807 kb on + strand, within CA264_12430at 2895.825 kb on + strand, within CA264_12430at 2895.851 kb on + strand, within CA264_12430at 2895.856 kb on + strand, within CA264_12430at 2895.876 kb on + strand, within CA264_12430at 2895.890 kb on + strand, within CA264_12430at 2895.890 kb on + strandat 2895.952 kb on + strand, within CA264_12430at 2895.960 kb on + strand, within CA264_12430at 2895.960 kb on + strand, within CA264_12430at 2895.960 kb on + strand, within CA264_12430at 2895.961 kb on - strand, within CA264_12430at 2896.017 kb on + strand, within CA264_12430at 2896.018 kb on - strand, within CA264_12430at 2896.020 kb on + strand, within CA264_12430at 2896.085 kb on + strand, within CA264_12430at 2896.194 kb on + strand, within CA264_12430at 2896.194 kb on + strand, within CA264_12430at 2896.196 kb on + strand, within CA264_12430at 2896.240 kb on - strand, within CA264_12430at 2896.243 kb on + strand, within CA264_12430at 2896.244 kb on - strand, within CA264_12430at 2896.246 kb on + strand, within CA264_12430at 2896.246 kb on + strand, within CA264_12430at 2896.284 kb on + strand, within CA264_12430at 2896.286 kb on - strand, within CA264_12430at 2896.286 kb on - strand, within CA264_12430at 2896.331 kb on - strandat 2896.343 kb on - strandat 2896.367 kb on - strandat 2896.440 kb on - strandat 2896.440 kb on - strandat 2896.447 kb on + strandat 2896.452 kb on + strandat 2896.517 kb on + strand, within CA264_12435at 2896.610 kb on + strand, within CA264_12435at 2896.621 kb on + strand, within CA264_12435at 2896.684 kb on + strand, within CA264_12435at 2896.684 kb on + strand, within CA264_12435at 2896.684 kb on + strand, within CA264_12435at 2896.688 kb on + strand, within CA264_12435at 2896.701 kb on + strand, within CA264_12435at 2896.808 kb on + strand, within CA264_12435at 2896.877 kb on + strand, within CA264_12435at 2896.892 kb on + strand, within CA264_12435at 2896.986 kb on + strand, within CA264_12435at 2896.998 kb on + strand, within CA264_12435at 2897.008 kb on + strand, within CA264_12435at 2897.008 kb on + strand, within CA264_12435at 2897.010 kb on + strand, within CA264_12435at 2897.010 kb on + strand, within CA264_12435at 2897.010 kb on + strand, within CA264_12435at 2897.011 kb on - strand, within CA264_12435at 2897.011 kb on - strand, within CA264_12435at 2897.012 kb on + strand, within CA264_12435at 2897.012 kb on + strand, within CA264_12435at 2897.012 kb on + strand, within CA264_12435at 2897.013 kb on - strand, within CA264_12435at 2897.013 kb on - strand, within CA264_12435at 2897.053 kb on - strandat 2897.094 kb on - strandat 2897.108 kb on + strandat 2897.108 kb on + strandat 2897.109 kb on - strandat 2897.109 kb on - strandat 2897.109 kb on - strandat 2897.112 kb on + strandat 2897.113 kb on - strandat 2897.127 kb on - strandat 2897.127 kb on - strandat 2897.127 kb on - strandat 2897.128 kb on + strandat 2897.404 kb on + strand, within CA264_12440at 2897.817 kb on + strand, within CA264_12440at 2897.821 kb on + strand, within CA264_12440

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM
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2,895,448 + +1.2
2,895,549 - CA264_12430 0.16 -1.8
2,895,571 - CA264_12430 0.18 -1.1
2,895,575 + CA264_12430 0.18 -1.9
2,895,594 - CA264_12430 0.20 -1.4
2,895,600 + CA264_12430 0.21 -0.9
2,895,600 + CA264_12430 0.21 +0.2
2,895,600 + CA264_12430 0.21 -1.1
2,895,602 + CA264_12430 0.21 -0.8
2,895,602 + CA264_12430 0.21 -1.4
2,895,602 + CA264_12430 0.21 +0.3
2,895,603 - CA264_12430 0.21 -0.9
2,895,664 + CA264_12430 0.27 +0.4
2,895,670 + CA264_12430 0.27 +0.5
2,895,750 + CA264_12430 0.35 -1.6
2,895,750 + CA264_12430 0.35 +0.5
2,895,754 + CA264_12430 0.35 +0.6
2,895,782 + +0.2
2,895,803 - CA264_12430 0.40 -1.2
2,895,807 + CA264_12430 0.40 -0.8
2,895,825 + CA264_12430 0.42 -0.7
2,895,851 + CA264_12430 0.45 -0.8
2,895,856 + CA264_12430 0.45 -0.2
2,895,876 + CA264_12430 0.47 -2.8
2,895,890 + CA264_12430 0.48 -0.4
2,895,890 + +1.4
2,895,952 + CA264_12430 0.54 +0.4
2,895,960 + CA264_12430 0.55 -0.1
2,895,960 + CA264_12430 0.55 +0.4
2,895,960 + CA264_12430 0.55 +0.6
2,895,961 - CA264_12430 0.55 +0.6
2,896,017 + CA264_12430 0.60 -1.6
2,896,018 - CA264_12430 0.60 -0.2
2,896,020 + CA264_12430 0.61 -0.1
2,896,085 + CA264_12430 0.67 -0.1
2,896,194 + CA264_12430 0.77 -1.2
2,896,194 + CA264_12430 0.77 -1.5
2,896,196 + CA264_12430 0.77 +0.4
2,896,240 - CA264_12430 0.82 -0.4
2,896,243 + CA264_12430 0.82 -1.4
2,896,244 - CA264_12430 0.82 -0.9
2,896,246 + CA264_12430 0.82 -1.0
2,896,246 + CA264_12430 0.82 -0.1
2,896,284 + CA264_12430 0.86 -1.3
2,896,286 - CA264_12430 0.86 +0.5
2,896,286 - CA264_12430 0.86 +0.2
2,896,331 - -0.9
2,896,343 - +1.7
2,896,367 - -0.6
2,896,440 - -0.3
2,896,440 - -1.3
2,896,447 + -0.1
2,896,452 + -3.0
2,896,517 + CA264_12435 0.12 -0.9
2,896,610 + CA264_12435 0.26 -1.4
2,896,621 + CA264_12435 0.28 -1.0
2,896,684 + CA264_12435 0.37 -0.8
2,896,684 + CA264_12435 0.37 +0.2
2,896,684 + CA264_12435 0.37 -1.8
2,896,688 + CA264_12435 0.38 -0.4
2,896,701 + CA264_12435 0.40 -0.7
2,896,808 + CA264_12435 0.56 -1.2
2,896,877 + CA264_12435 0.66 -1.7
2,896,892 + CA264_12435 0.68 -2.1
2,896,986 + CA264_12435 0.82 -0.1
2,896,998 + CA264_12435 0.84 -0.1
2,897,008 + CA264_12435 0.85 -2.1
2,897,008 + CA264_12435 0.85 -1.4
2,897,010 + CA264_12435 0.86 -0.8
2,897,010 + CA264_12435 0.86 -0.3
2,897,010 + CA264_12435 0.86 -1.2
2,897,011 - CA264_12435 0.86 -1.6
2,897,011 - CA264_12435 0.86 -0.2
2,897,012 + CA264_12435 0.86 -1.9
2,897,012 + CA264_12435 0.86 +0.7
2,897,012 + CA264_12435 0.86 -2.1
2,897,013 - CA264_12435 0.86 -0.6
2,897,013 - CA264_12435 0.86 -2.7
2,897,053 - +0.7
2,897,094 - -0.8
2,897,108 + -2.0
2,897,108 + -1.6
2,897,109 - -0.2
2,897,109 - -0.4
2,897,109 - +1.3
2,897,112 + -0.8
2,897,113 - -1.2
2,897,127 - -1.5
2,897,127 - -0.6
2,897,127 - -1.1
2,897,128 + -2.3
2,897,404 + CA264_12440 0.34 -1.1
2,897,817 + CA264_12440 0.81 -1.1
2,897,821 + CA264_12440 0.81 -2.0

Or see this region's nucleotide sequence