Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_12005

Experiment: m.b. Lomefloxacin 0.004 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_12000 and CA264_12005 are separated by 56 nucleotidesCA264_12005 and CA264_12010 are separated by 241 nucleotides CA264_12000: CA264_12000 - MBL fold metallo-hydrolase, at 2,786,523 to 2,787,620 _12000 CA264_12005: CA264_12005 - hypothetical protein, at 2,787,677 to 2,787,865 _12005 CA264_12010: CA264_12010 - ATP-binding protein, at 2,788,107 to 2,788,841 _12010 Position (kb) 2787 2788Strain fitness (log2 ratio) -2 -1 0 1 2at 2786.743 kb on + strand, within CA264_12000at 2786.744 kb on - strand, within CA264_12000at 2786.744 kb on - strand, within CA264_12000at 2786.744 kb on - strand, within CA264_12000at 2786.815 kb on - strand, within CA264_12000at 2786.838 kb on + strand, within CA264_12000at 2786.838 kb on + strand, within CA264_12000at 2786.839 kb on - strand, within CA264_12000at 2786.839 kb on - strand, within CA264_12000at 2786.840 kb on + strand, within CA264_12000at 2786.882 kb on - strand, within CA264_12000at 2786.901 kb on + strand, within CA264_12000at 2786.902 kb on - strand, within CA264_12000at 2786.902 kb on - strand, within CA264_12000at 2786.902 kb on - strand, within CA264_12000at 2786.902 kb on - strand, within CA264_12000at 2786.930 kb on + strand, within CA264_12000at 2786.939 kb on + strand, within CA264_12000at 2787.137 kb on - strand, within CA264_12000at 2787.154 kb on - strand, within CA264_12000at 2787.158 kb on + strand, within CA264_12000at 2787.159 kb on - strand, within CA264_12000at 2787.201 kb on + strand, within CA264_12000at 2787.327 kb on + strand, within CA264_12000at 2787.327 kb on + strand, within CA264_12000at 2787.330 kb on - strand, within CA264_12000at 2787.331 kb on + strand, within CA264_12000at 2787.332 kb on - strand, within CA264_12000at 2787.433 kb on + strand, within CA264_12000at 2787.475 kb on - strand, within CA264_12000at 2787.572 kb on - strandat 2787.612 kb on + strandat 2787.675 kb on - strandat 2787.740 kb on + strand, within CA264_12005at 2787.741 kb on - strand, within CA264_12005at 2787.780 kb on - strand, within CA264_12005at 2787.809 kb on - strand, within CA264_12005at 2787.839 kb on - strand, within CA264_12005at 2787.870 kb on + strandat 2787.870 kb on + strandat 2787.871 kb on - strandat 2787.910 kb on - strandat 2787.927 kb on - strandat 2787.927 kb on - strandat 2787.983 kb on + strandat 2788.081 kb on + strandat 2788.192 kb on - strand, within CA264_12010at 2788.240 kb on + strand, within CA264_12010at 2788.240 kb on + strand, within CA264_12010at 2788.240 kb on + strand, within CA264_12010at 2788.241 kb on - strand, within CA264_12010at 2788.241 kb on - strand, within CA264_12010at 2788.349 kb on + strand, within CA264_12010at 2788.350 kb on - strand, within CA264_12010at 2788.379 kb on - strand, within CA264_12010at 2788.379 kb on - strand, within CA264_12010at 2788.526 kb on + strand, within CA264_12010at 2788.715 kb on + strand, within CA264_12010at 2788.716 kb on - strand, within CA264_12010at 2788.842 kb on + strandat 2788.843 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM
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2,786,743 + CA264_12000 0.20 +1.4
2,786,744 - CA264_12000 0.20 +0.0
2,786,744 - CA264_12000 0.20 -1.0
2,786,744 - CA264_12000 0.20 -0.2
2,786,815 - CA264_12000 0.27 +0.7
2,786,838 + CA264_12000 0.29 -0.2
2,786,838 + CA264_12000 0.29 +0.6
2,786,839 - CA264_12000 0.29 +0.6
2,786,839 - CA264_12000 0.29 -1.6
2,786,840 + CA264_12000 0.29 -2.1
2,786,882 - CA264_12000 0.33 +2.5
2,786,901 + CA264_12000 0.34 -0.8
2,786,902 - CA264_12000 0.35 -0.6
2,786,902 - CA264_12000 0.35 +0.2
2,786,902 - CA264_12000 0.35 +0.6
2,786,902 - CA264_12000 0.35 -1.3
2,786,930 + CA264_12000 0.37 +0.8
2,786,939 + CA264_12000 0.38 -1.1
2,787,137 - CA264_12000 0.56 -1.1
2,787,154 - CA264_12000 0.57 -0.1
2,787,158 + CA264_12000 0.58 -1.3
2,787,159 - CA264_12000 0.58 -2.3
2,787,201 + CA264_12000 0.62 -0.1
2,787,327 + CA264_12000 0.73 +0.7
2,787,327 + CA264_12000 0.73 -0.3
2,787,330 - CA264_12000 0.73 -1.0
2,787,331 + CA264_12000 0.74 -0.9
2,787,332 - CA264_12000 0.74 +0.2
2,787,433 + CA264_12000 0.83 -0.4
2,787,475 - CA264_12000 0.87 +0.0
2,787,572 - -1.1
2,787,612 + +0.1
2,787,675 - +0.3
2,787,740 + CA264_12005 0.33 -1.2
2,787,741 - CA264_12005 0.34 -1.3
2,787,780 - CA264_12005 0.54 -2.5
2,787,809 - CA264_12005 0.70 -0.6
2,787,839 - CA264_12005 0.86 +1.4
2,787,870 + -0.3
2,787,870 + +1.4
2,787,871 - -0.5
2,787,910 - -0.4
2,787,927 - -0.3
2,787,927 - -0.7
2,787,983 + -1.2
2,788,081 + +0.2
2,788,192 - CA264_12010 0.12 +1.4
2,788,240 + CA264_12010 0.18 -0.2
2,788,240 + CA264_12010 0.18 -0.4
2,788,240 + CA264_12010 0.18 -0.5
2,788,241 - CA264_12010 0.18 -0.5
2,788,241 - CA264_12010 0.18 -0.6
2,788,349 + CA264_12010 0.33 +1.9
2,788,350 - CA264_12010 0.33 -0.1
2,788,379 - CA264_12010 0.37 +0.0
2,788,379 - CA264_12010 0.37 -0.5
2,788,526 + CA264_12010 0.57 -0.4
2,788,715 + CA264_12010 0.83 +0.2
2,788,716 - CA264_12010 0.83 +0.3
2,788,842 + +1.1
2,788,843 - -0.7

Or see this region's nucleotide sequence