Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_11775

Experiment: m.b. Lomefloxacin 0.004 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_11770 and CA264_11775 are separated by 898 nucleotidesCA264_11775 and CA264_11780 are separated by 248 nucleotidesCA264_11780 and CA264_11785 are separated by 68 nucleotidesCA264_11785 and CA264_11790 are separated by 121 nucleotides CA264_11770: CA264_11770 - hypothetical protein, at 2,742,741 to 2,744,102 _11770 CA264_11775: CA264_11775 - hypothetical protein, at 2,745,001 to 2,745,228 _11775 CA264_11780: CA264_11780 - tRNA-Arg, at 2,745,477 to 2,745,550 _11780 CA264_11785: CA264_11785 - tRNA-Pro, at 2,745,619 to 2,745,695 _11785 CA264_11790: CA264_11790 - tRNA-Ser, at 2,745,817 to 2,745,903 _11790 Position (kb) 2745 2746Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2744.210 kb on + strandat 2744.211 kb on - strandat 2744.246 kb on + strandat 2744.254 kb on + strandat 2744.264 kb on + strandat 2744.264 kb on + strandat 2744.354 kb on + strandat 2744.356 kb on + strandat 2744.356 kb on + strandat 2744.409 kb on + strandat 2744.410 kb on - strandat 2744.410 kb on - strandat 2744.411 kb on + strandat 2744.412 kb on - strandat 2744.412 kb on - strandat 2744.412 kb on - strandat 2744.412 kb on - strandat 2744.415 kb on - strandat 2744.415 kb on - strandat 2744.430 kb on - strandat 2744.442 kb on - strandat 2744.465 kb on - strandat 2744.485 kb on - strandat 2744.489 kb on + strandat 2744.648 kb on - strandat 2744.669 kb on - strandat 2744.697 kb on + strandat 2744.733 kb on - strandat 2744.733 kb on - strandat 2744.733 kb on - strandat 2744.751 kb on - strandat 2744.751 kb on - strandat 2744.756 kb on + strandat 2744.770 kb on - strandat 2744.770 kb on - strandat 2744.773 kb on - strandat 2744.782 kb on - strandat 2744.796 kb on - strandat 2744.798 kb on - strandat 2744.799 kb on + strandat 2744.799 kb on + strandat 2744.799 kb on + strandat 2744.803 kb on + strandat 2744.803 kb on + strandat 2744.803 kb on + strandat 2744.803 kb on + strandat 2744.803 kb on + strandat 2744.804 kb on - strandat 2744.804 kb on - strandat 2744.804 kb on - strandat 2744.804 kb on - strandat 2744.844 kb on + strandat 2744.890 kb on - strandat 2744.924 kb on + strandat 2744.934 kb on + strandat 2744.954 kb on + strandat 2744.979 kb on + strandat 2744.979 kb on + strandat 2745.000 kb on + strandat 2745.015 kb on - strandat 2745.015 kb on - strandat 2745.018 kb on + strandat 2745.091 kb on + strand, within CA264_11775at 2745.114 kb on + strand, within CA264_11775at 2745.115 kb on - strand, within CA264_11775at 2745.133 kb on + strand, within CA264_11775at 2745.133 kb on + strand, within CA264_11775at 2745.134 kb on - strand, within CA264_11775at 2745.134 kb on - strand, within CA264_11775at 2745.179 kb on + strand, within CA264_11775at 2745.180 kb on - strand, within CA264_11775at 2745.180 kb on - strand, within CA264_11775at 2745.193 kb on - strand, within CA264_11775at 2745.244 kb on - strandat 2745.247 kb on + strandat 2745.273 kb on - strandat 2745.273 kb on - strandat 2745.277 kb on + strandat 2745.277 kb on + strandat 2745.282 kb on + strandat 2745.282 kb on + strandat 2745.303 kb on + strandat 2745.303 kb on + strandat 2745.303 kb on + strandat 2745.309 kb on + strandat 2745.309 kb on + strandat 2745.309 kb on + strandat 2745.315 kb on + strandat 2745.315 kb on + strandat 2745.812 kb on + strandat 2745.812 kb on + strandat 2745.813 kb on - strandat 2746.031 kb on - strandat 2746.037 kb on - strandat 2746.100 kb on + strandat 2746.101 kb on - strandat 2746.169 kb on - strandat 2746.169 kb on - strandat 2746.190 kb on + strandat 2746.190 kb on + strandat 2746.190 kb on + strandat 2746.191 kb on - strandat 2746.211 kb on + strandat 2746.211 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM
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2,744,210 + -0.5
2,744,211 - +0.5
2,744,246 + -0.7
2,744,254 + +1.0
2,744,264 + -0.2
2,744,264 + +0.5
2,744,354 + +0.1
2,744,356 + +0.3
2,744,356 + -1.1
2,744,409 + -0.3
2,744,410 - -1.6
2,744,410 - -1.0
2,744,411 + -0.3
2,744,412 - -1.1
2,744,412 - -0.5
2,744,412 - -0.6
2,744,412 - +0.9
2,744,415 - +0.4
2,744,415 - +0.2
2,744,430 - +0.3
2,744,442 - -0.2
2,744,465 - +0.3
2,744,485 - -1.4
2,744,489 + -0.7
2,744,648 - +1.3
2,744,669 - -0.6
2,744,697 + -1.1
2,744,733 - +0.5
2,744,733 - -1.9
2,744,733 - -0.1
2,744,751 - -0.3
2,744,751 - +0.7
2,744,756 + +0.3
2,744,770 - -2.4
2,744,770 - -0.1
2,744,773 - -0.4
2,744,782 - -0.6
2,744,796 - -0.2
2,744,798 - +0.8
2,744,799 + -0.6
2,744,799 + -0.2
2,744,799 + -1.2
2,744,803 + -0.8
2,744,803 + +0.3
2,744,803 + -0.5
2,744,803 + -0.0
2,744,803 + -0.5
2,744,804 - +0.2
2,744,804 - +0.4
2,744,804 - +1.3
2,744,804 - -0.2
2,744,844 + -0.4
2,744,890 - +0.6
2,744,924 + +0.8
2,744,934 + +0.5
2,744,954 + -0.0
2,744,979 + -1.0
2,744,979 + +0.3
2,745,000 + -1.4
2,745,015 - +0.0
2,745,015 - -1.1
2,745,018 + -0.6
2,745,091 + CA264_11775 0.39 -0.1
2,745,114 + CA264_11775 0.50 +1.4
2,745,115 - CA264_11775 0.50 +0.2
2,745,133 + CA264_11775 0.58 -0.4
2,745,133 + CA264_11775 0.58 +0.7
2,745,134 - CA264_11775 0.58 +0.0
2,745,134 - CA264_11775 0.58 +0.9
2,745,179 + CA264_11775 0.78 +1.0
2,745,180 - CA264_11775 0.79 -0.5
2,745,180 - CA264_11775 0.79 -1.2
2,745,193 - CA264_11775 0.84 +1.2
2,745,244 - -0.8
2,745,247 + -0.7
2,745,273 - -0.7
2,745,273 - +1.2
2,745,277 + +3.0
2,745,277 + -1.4
2,745,282 + -0.7
2,745,282 + +0.2
2,745,303 + -2.2
2,745,303 + +0.1
2,745,303 + -1.0
2,745,309 + +0.2
2,745,309 + -0.1
2,745,309 + -0.9
2,745,315 + +1.0
2,745,315 + -0.2
2,745,812 + -1.6
2,745,812 + -1.5
2,745,813 - +0.6
2,746,031 - -0.1
2,746,037 - +0.4
2,746,100 + -0.6
2,746,101 - -0.7
2,746,169 - -0.4
2,746,169 - +0.9
2,746,190 + -0.2
2,746,190 + +0.8
2,746,190 + -0.1
2,746,191 - -0.3
2,746,211 + +0.2
2,746,211 + +0.0

Or see this region's nucleotide sequence