Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_10735

Experiment: m.b. Lomefloxacin 0.004 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_10730 and CA264_10735 are separated by 279 nucleotidesCA264_10735 and CA264_10740 are separated by 91 nucleotides CA264_10730: CA264_10730 - aconitate hydratase, at 2,478,007 to 2,480,286 _10730 CA264_10735: CA264_10735 - alkyl hydroperoxide reductase, at 2,480,566 to 2,481,747 _10735 CA264_10740: CA264_10740 - hypothetical protein, at 2,481,839 to 2,482,630 _10740 Position (kb) 2480 2481 2482Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2480.310 kb on + strandat 2480.311 kb on - strandat 2480.316 kb on - strandat 2480.347 kb on - strandat 2480.366 kb on - strandat 2480.372 kb on + strandat 2480.372 kb on + strandat 2480.373 kb on - strandat 2480.380 kb on + strandat 2480.380 kb on + strandat 2480.380 kb on + strandat 2480.389 kb on - strandat 2480.389 kb on - strandat 2480.407 kb on - strandat 2480.428 kb on + strandat 2480.429 kb on - strandat 2480.429 kb on - strandat 2480.435 kb on + strandat 2480.435 kb on + strandat 2480.435 kb on + strandat 2480.436 kb on - strandat 2480.442 kb on + strandat 2480.549 kb on + strandat 2480.559 kb on + strandat 2480.559 kb on + strandat 2480.559 kb on + strandat 2480.560 kb on - strandat 2480.565 kb on + strandat 2480.565 kb on + strandat 2480.566 kb on - strandat 2480.566 kb on - strandat 2480.589 kb on - strandat 2480.684 kb on + strandat 2480.687 kb on - strand, within CA264_10735at 2480.687 kb on - strand, within CA264_10735at 2480.724 kb on + strand, within CA264_10735at 2480.845 kb on + strand, within CA264_10735at 2480.845 kb on + strand, within CA264_10735at 2480.845 kb on + strand, within CA264_10735at 2480.846 kb on - strand, within CA264_10735at 2480.971 kb on + strand, within CA264_10735at 2480.972 kb on - strand, within CA264_10735at 2481.049 kb on + strand, within CA264_10735at 2481.082 kb on - strand, within CA264_10735at 2481.091 kb on - strand, within CA264_10735at 2481.163 kb on + strand, within CA264_10735at 2481.181 kb on + strand, within CA264_10735at 2481.240 kb on + strand, within CA264_10735at 2481.326 kb on - strand, within CA264_10735at 2481.326 kb on - strand, within CA264_10735at 2481.390 kb on + strand, within CA264_10735at 2481.409 kb on + strand, within CA264_10735at 2481.410 kb on - strand, within CA264_10735at 2481.449 kb on + strand, within CA264_10735at 2481.521 kb on + strand, within CA264_10735at 2481.526 kb on + strand, within CA264_10735at 2481.526 kb on + strand, within CA264_10735at 2481.526 kb on + strand, within CA264_10735at 2481.641 kb on + strandat 2481.642 kb on - strandat 2481.650 kb on + strandat 2481.650 kb on + strandat 2481.650 kb on + strandat 2481.651 kb on - strandat 2481.651 kb on - strandat 2481.685 kb on + strandat 2481.686 kb on - strandat 2481.812 kb on - strandat 2481.828 kb on + strandat 2481.841 kb on - strandat 2481.861 kb on + strandat 2481.866 kb on - strandat 2481.899 kb on - strandat 2481.899 kb on - strandat 2481.919 kb on + strand, within CA264_10740at 2481.919 kb on + strand, within CA264_10740at 2481.933 kb on + strand, within CA264_10740at 2481.933 kb on + strand, within CA264_10740at 2481.937 kb on + strand, within CA264_10740at 2481.937 kb on + strand, within CA264_10740at 2481.943 kb on - strand, within CA264_10740at 2481.960 kb on + strand, within CA264_10740at 2481.960 kb on + strand, within CA264_10740at 2481.961 kb on - strand, within CA264_10740at 2481.974 kb on + strand, within CA264_10740at 2481.974 kb on + strand, within CA264_10740at 2481.975 kb on - strand, within CA264_10740at 2482.008 kb on - strand, within CA264_10740at 2482.057 kb on - strand, within CA264_10740at 2482.105 kb on + strand, within CA264_10740at 2482.105 kb on + strand, within CA264_10740at 2482.106 kb on - strand, within CA264_10740at 2482.106 kb on - strand, within CA264_10740at 2482.106 kb on - strand, within CA264_10740at 2482.110 kb on + strand, within CA264_10740at 2482.111 kb on - strand, within CA264_10740at 2482.125 kb on + strand, within CA264_10740at 2482.126 kb on - strand, within CA264_10740at 2482.135 kb on + strand, within CA264_10740at 2482.135 kb on + strand, within CA264_10740at 2482.180 kb on + strand, within CA264_10740at 2482.181 kb on - strand, within CA264_10740at 2482.182 kb on + strand, within CA264_10740at 2482.182 kb on + strand, within CA264_10740at 2482.183 kb on - strand, within CA264_10740at 2482.205 kb on + strand, within CA264_10740at 2482.221 kb on + strand, within CA264_10740at 2482.221 kb on + strand, within CA264_10740at 2482.221 kb on + strand, within CA264_10740at 2482.222 kb on - strand, within CA264_10740at 2482.303 kb on + strand, within CA264_10740at 2482.304 kb on - strand, within CA264_10740at 2482.379 kb on + strand, within CA264_10740at 2482.379 kb on + strand, within CA264_10740at 2482.453 kb on + strand, within CA264_10740at 2482.454 kb on - strand, within CA264_10740at 2482.459 kb on + strand, within CA264_10740at 2482.460 kb on - strand, within CA264_10740at 2482.464 kb on - strand, within CA264_10740at 2482.479 kb on - strand, within CA264_10740at 2482.530 kb on - strand, within CA264_10740at 2482.530 kb on - strand, within CA264_10740at 2482.614 kb on - strandat 2482.638 kb on + strandat 2482.638 kb on + strandat 2482.639 kb on - strandat 2482.704 kb on - strandat 2482.704 kb on - strandat 2482.704 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM
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2,480,310 + -0.1
2,480,311 - -0.6
2,480,316 - +1.2
2,480,347 - +1.2
2,480,366 - -1.0
2,480,372 + -2.4
2,480,372 + +1.3
2,480,373 - -0.7
2,480,380 + -0.6
2,480,380 + -1.6
2,480,380 + +0.5
2,480,389 - -1.1
2,480,389 - -1.4
2,480,407 - -0.9
2,480,428 + -0.1
2,480,429 - +0.9
2,480,429 - -0.5
2,480,435 + -2.2
2,480,435 + +0.9
2,480,435 + -0.6
2,480,436 - -1.8
2,480,442 + +0.4
2,480,549 + -0.4
2,480,559 + -1.5
2,480,559 + -0.2
2,480,559 + +1.2
2,480,560 - +1.2
2,480,565 + +0.2
2,480,565 + -1.0
2,480,566 - -0.2
2,480,566 - -0.2
2,480,589 - +0.4
2,480,684 + -0.9
2,480,687 - CA264_10735 0.10 +0.2
2,480,687 - CA264_10735 0.10 -2.3
2,480,724 + CA264_10735 0.13 -2.8
2,480,845 + CA264_10735 0.24 -0.4
2,480,845 + CA264_10735 0.24 -1.0
2,480,845 + CA264_10735 0.24 -1.2
2,480,846 - CA264_10735 0.24 +0.4
2,480,971 + CA264_10735 0.34 -0.7
2,480,972 - CA264_10735 0.34 +0.2
2,481,049 + CA264_10735 0.41 +0.1
2,481,082 - CA264_10735 0.44 -1.0
2,481,091 - CA264_10735 0.44 -1.0
2,481,163 + CA264_10735 0.51 -0.8
2,481,181 + CA264_10735 0.52 -0.3
2,481,240 + CA264_10735 0.57 +0.9
2,481,326 - CA264_10735 0.64 -0.8
2,481,326 - CA264_10735 0.64 -1.0
2,481,390 + CA264_10735 0.70 -0.7
2,481,409 + CA264_10735 0.71 +0.2
2,481,410 - CA264_10735 0.71 -2.3
2,481,449 + CA264_10735 0.75 -2.0
2,481,521 + CA264_10735 0.81 -0.8
2,481,526 + CA264_10735 0.81 +0.2
2,481,526 + CA264_10735 0.81 -0.4
2,481,526 + CA264_10735 0.81 -0.2
2,481,641 + -0.7
2,481,642 - +0.4
2,481,650 + -1.7
2,481,650 + +0.6
2,481,650 + -0.1
2,481,651 - -0.1
2,481,651 - -0.1
2,481,685 + -0.7
2,481,686 - +0.2
2,481,812 - -0.7
2,481,828 + -0.6
2,481,841 - -1.2
2,481,861 + -1.1
2,481,866 - +0.4
2,481,899 - +0.4
2,481,899 - -2.6
2,481,919 + CA264_10740 0.10 +1.1
2,481,919 + CA264_10740 0.10 -1.1
2,481,933 + CA264_10740 0.12 -1.5
2,481,933 + CA264_10740 0.12 -0.3
2,481,937 + CA264_10740 0.12 -0.7
2,481,937 + CA264_10740 0.12 -0.1
2,481,943 - CA264_10740 0.13 +1.0
2,481,960 + CA264_10740 0.15 -0.6
2,481,960 + CA264_10740 0.15 -0.8
2,481,961 - CA264_10740 0.15 +1.1
2,481,974 + CA264_10740 0.17 -0.5
2,481,974 + CA264_10740 0.17 +2.0
2,481,975 - CA264_10740 0.17 +1.2
2,482,008 - CA264_10740 0.21 +0.1
2,482,057 - CA264_10740 0.28 -1.2
2,482,105 + CA264_10740 0.34 +0.0
2,482,105 + CA264_10740 0.34 -0.2
2,482,106 - CA264_10740 0.34 -0.5
2,482,106 - CA264_10740 0.34 -1.0
2,482,106 - CA264_10740 0.34 -0.2
2,482,110 + CA264_10740 0.34 -0.2
2,482,111 - CA264_10740 0.34 -0.1
2,482,125 + CA264_10740 0.36 +0.0
2,482,126 - CA264_10740 0.36 -1.7
2,482,135 + CA264_10740 0.37 +1.7
2,482,135 + CA264_10740 0.37 +0.2
2,482,180 + CA264_10740 0.43 +0.2
2,482,181 - CA264_10740 0.43 -0.6
2,482,182 + CA264_10740 0.43 -0.3
2,482,182 + CA264_10740 0.43 -0.8
2,482,183 - CA264_10740 0.43 +0.4
2,482,205 + CA264_10740 0.46 -0.3
2,482,221 + CA264_10740 0.48 +0.2
2,482,221 + CA264_10740 0.48 +0.5
2,482,221 + CA264_10740 0.48 +1.2
2,482,222 - CA264_10740 0.48 +0.2
2,482,303 + CA264_10740 0.59 +0.1
2,482,304 - CA264_10740 0.59 -1.1
2,482,379 + CA264_10740 0.68 -0.5
2,482,379 + CA264_10740 0.68 +2.2
2,482,453 + CA264_10740 0.78 +0.6
2,482,454 - CA264_10740 0.78 -0.6
2,482,459 + CA264_10740 0.78 -0.5
2,482,460 - CA264_10740 0.78 +0.9
2,482,464 - CA264_10740 0.79 -0.8
2,482,479 - CA264_10740 0.81 +0.1
2,482,530 - CA264_10740 0.87 -2.4
2,482,530 - CA264_10740 0.87 -0.1
2,482,614 - -0.3
2,482,638 + -0.7
2,482,638 + -0.9
2,482,639 - +1.0
2,482,704 - +0.4
2,482,704 - +2.5
2,482,704 - +1.0

Or see this region's nucleotide sequence