Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09925

Experiment: m.b. Lomefloxacin 0.004 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09920 and CA264_09925 are separated by 919 nucleotidesCA264_09925 and CA264_09930 are separated by 53 nucleotidesCA264_09930 and CA264_09935 are separated by 37 nucleotides CA264_09920: CA264_09920 - IS5/IS1182 family transposase, at 2,311,764 to 2,312,237 _09920 CA264_09925: CA264_09925 - hypothetical protein, at 2,313,157 to 2,313,462 _09925 CA264_09930: CA264_09930 - hypothetical protein, at 2,313,516 to 2,314,304 _09930 CA264_09935: CA264_09935 - conjugative transposon protein TraN, at 2,314,342 to 2,315,187 _09935 Position (kb) 2313 2314Strain fitness (log2 ratio) -2 -1 0 1 2at 2312.299 kb on + strandat 2312.300 kb on - strandat 2312.300 kb on - strandat 2312.300 kb on - strandat 2312.302 kb on + strandat 2312.303 kb on - strandat 2312.303 kb on - strandat 2312.305 kb on + strandat 2312.306 kb on - strandat 2312.383 kb on + strandat 2312.391 kb on + strandat 2312.446 kb on - strandat 2312.477 kb on + strandat 2312.478 kb on - strandat 2312.478 kb on - strandat 2312.479 kb on + strandat 2312.480 kb on - strandat 2312.518 kb on - strandat 2312.551 kb on + strandat 2312.625 kb on - strandat 2312.702 kb on + strandat 2312.752 kb on + strandat 2312.753 kb on - strandat 2312.860 kb on - strandat 2312.880 kb on + strandat 2312.880 kb on + strandat 2312.911 kb on - strandat 2312.911 kb on - strandat 2312.953 kb on + strandat 2312.958 kb on - strandat 2313.077 kb on - strandat 2313.077 kb on - strandat 2313.083 kb on + strandat 2313.084 kb on - strandat 2313.084 kb on - strandat 2313.216 kb on - strand, within CA264_09925at 2313.227 kb on + strand, within CA264_09925at 2313.228 kb on - strand, within CA264_09925at 2313.228 kb on - strand, within CA264_09925at 2313.272 kb on + strand, within CA264_09925at 2313.272 kb on + strand, within CA264_09925at 2313.272 kb on + strand, within CA264_09925at 2313.419 kb on - strand, within CA264_09925at 2313.419 kb on - strand, within CA264_09925at 2313.419 kb on - strand, within CA264_09925at 2313.481 kb on - strandat 2313.692 kb on + strand, within CA264_09930at 2313.692 kb on + strand, within CA264_09930at 2313.692 kb on + strand, within CA264_09930at 2313.694 kb on + strand, within CA264_09930at 2313.694 kb on + strand, within CA264_09930at 2313.741 kb on + strand, within CA264_09930at 2313.741 kb on + strand, within CA264_09930at 2313.865 kb on + strand, within CA264_09930at 2313.865 kb on + strand, within CA264_09930at 2313.866 kb on - strand, within CA264_09930at 2313.893 kb on - strand, within CA264_09930at 2313.943 kb on + strand, within CA264_09930at 2313.944 kb on - strand, within CA264_09930at 2314.004 kb on - strand, within CA264_09930at 2314.022 kb on + strand, within CA264_09930at 2314.023 kb on - strand, within CA264_09930at 2314.023 kb on - strand, within CA264_09930at 2314.023 kb on - strand, within CA264_09930at 2314.042 kb on + strand, within CA264_09930at 2314.166 kb on + strand, within CA264_09930at 2314.172 kb on - strand, within CA264_09930at 2314.172 kb on - strand, within CA264_09930at 2314.172 kb on - strand, within CA264_09930at 2314.261 kb on + strandat 2314.261 kb on + strandat 2314.283 kb on - strandat 2314.330 kb on + strandat 2314.331 kb on - strandat 2314.331 kb on - strandat 2314.348 kb on + strandat 2314.349 kb on - strandat 2314.396 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM
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2,312,299 + -0.4
2,312,300 - +0.0
2,312,300 - -0.9
2,312,300 - -1.1
2,312,302 + +0.1
2,312,303 - +0.6
2,312,303 - +0.8
2,312,305 + +0.6
2,312,306 - -0.7
2,312,383 + -1.6
2,312,391 + -1.0
2,312,446 - -0.2
2,312,477 + -0.7
2,312,478 - -1.6
2,312,478 - +0.4
2,312,479 + -0.2
2,312,480 - -0.2
2,312,518 - -0.3
2,312,551 + -0.6
2,312,625 - -1.6
2,312,702 + +0.1
2,312,752 + -0.5
2,312,753 - -1.9
2,312,860 - +0.8
2,312,880 + +0.2
2,312,880 + -0.4
2,312,911 - -1.4
2,312,911 - -1.6
2,312,953 + -0.4
2,312,958 - -1.3
2,313,077 - +0.3
2,313,077 - -1.2
2,313,083 + -0.1
2,313,084 - +0.6
2,313,084 - -1.0
2,313,216 - CA264_09925 0.19 -0.0
2,313,227 + CA264_09925 0.23 -0.2
2,313,228 - CA264_09925 0.23 -2.2
2,313,228 - CA264_09925 0.23 +0.5
2,313,272 + CA264_09925 0.38 +0.5
2,313,272 + CA264_09925 0.38 -1.5
2,313,272 + CA264_09925 0.38 -0.5
2,313,419 - CA264_09925 0.86 -0.5
2,313,419 - CA264_09925 0.86 -0.8
2,313,419 - CA264_09925 0.86 -1.6
2,313,481 - -0.2
2,313,692 + CA264_09930 0.22 +0.6
2,313,692 + CA264_09930 0.22 +1.2
2,313,692 + CA264_09930 0.22 +2.1
2,313,694 + CA264_09930 0.23 +0.6
2,313,694 + CA264_09930 0.23 -1.8
2,313,741 + CA264_09930 0.29 -0.0
2,313,741 + CA264_09930 0.29 -0.1
2,313,865 + CA264_09930 0.44 -0.4
2,313,865 + CA264_09930 0.44 +0.9
2,313,866 - CA264_09930 0.44 -1.7
2,313,893 - CA264_09930 0.48 -1.6
2,313,943 + CA264_09930 0.54 +0.6
2,313,944 - CA264_09930 0.54 -0.8
2,314,004 - CA264_09930 0.62 -0.6
2,314,022 + CA264_09930 0.64 -0.9
2,314,023 - CA264_09930 0.64 -1.2
2,314,023 - CA264_09930 0.64 -0.6
2,314,023 - CA264_09930 0.64 -2.0
2,314,042 + CA264_09930 0.67 -0.3
2,314,166 + CA264_09930 0.82 -0.7
2,314,172 - CA264_09930 0.83 -1.0
2,314,172 - CA264_09930 0.83 +0.3
2,314,172 - CA264_09930 0.83 +0.7
2,314,261 + -0.9
2,314,261 + +0.3
2,314,283 - -1.2
2,314,330 + +1.5
2,314,331 - -1.3
2,314,331 - -1.0
2,314,348 + -1.3
2,314,349 - -0.4
2,314,396 - -0.1

Or see this region's nucleotide sequence