Experiment: m.b. Lomefloxacin 0.004 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_09865 and CA264_09870 are separated by 291 nucleotides CA264_09870 and CA264_09875 are separated by 139 nucleotides
CA264_09865: CA264_09865 - TonB dependent receptor, at 2,294,631 to 2,297,072
_09865
CA264_09870: CA264_09870 - hypothetical protein, at 2,297,364 to 2,298,143
_09870
CA264_09875: CA264_09875 - hypothetical protein, at 2,298,283 to 2,299,863
_09875
Position (kb)
2297
2298
2299 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2296.502 kb on + strand, within CA264_09865 at 2296.502 kb on + strand, within CA264_09865 at 2296.658 kb on - strand, within CA264_09865 at 2296.789 kb on + strand, within CA264_09865 at 2296.789 kb on + strand, within CA264_09865 at 2296.854 kb on - strand at 2296.858 kb on + strand at 2297.096 kb on + strand at 2297.151 kb on - strand at 2297.151 kb on - strand at 2297.184 kb on + strand at 2297.208 kb on + strand at 2297.217 kb on + strand at 2297.217 kb on + strand at 2297.218 kb on - strand at 2297.218 kb on - strand at 2297.222 kb on + strand at 2297.223 kb on - strand at 2297.255 kb on + strand at 2297.256 kb on - strand at 2297.257 kb on + strand at 2297.258 kb on - strand at 2297.283 kb on - strand at 2297.283 kb on - strand at 2297.284 kb on + strand at 2297.285 kb on - strand at 2297.290 kb on + strand at 2297.386 kb on - strand at 2297.388 kb on + strand at 2297.481 kb on + strand, within CA264_09870 at 2297.521 kb on + strand, within CA264_09870 at 2297.522 kb on - strand, within CA264_09870 at 2297.522 kb on - strand, within CA264_09870 at 2297.542 kb on + strand, within CA264_09870 at 2297.542 kb on + strand, within CA264_09870 at 2297.542 kb on + strand, within CA264_09870 at 2297.698 kb on - strand, within CA264_09870 at 2297.698 kb on - strand, within CA264_09870 at 2297.822 kb on - strand, within CA264_09870 at 2297.830 kb on - strand, within CA264_09870 at 2297.834 kb on - strand, within CA264_09870 at 2297.876 kb on + strand, within CA264_09870 at 2297.876 kb on + strand, within CA264_09870 at 2297.877 kb on - strand, within CA264_09870 at 2297.880 kb on + strand, within CA264_09870 at 2297.927 kb on - strand, within CA264_09870 at 2298.039 kb on + strand, within CA264_09870 at 2298.039 kb on + strand, within CA264_09870 at 2298.039 kb on + strand, within CA264_09870 at 2298.040 kb on - strand, within CA264_09870 at 2298.040 kb on - strand, within CA264_09870 at 2298.040 kb on - strand, within CA264_09870 at 2298.098 kb on + strand at 2298.099 kb on - strand at 2298.104 kb on + strand at 2298.106 kb on + strand at 2298.142 kb on - strand at 2298.200 kb on + strand at 2298.213 kb on + strand at 2298.213 kb on + strand at 2298.221 kb on + strand at 2298.284 kb on + strand at 2298.285 kb on - strand at 2298.320 kb on - strand at 2298.320 kb on - strand at 2298.364 kb on + strand at 2298.377 kb on + strand at 2298.449 kb on + strand, within CA264_09875 at 2298.450 kb on - strand, within CA264_09875 at 2298.521 kb on + strand, within CA264_09875 at 2298.521 kb on + strand, within CA264_09875 at 2298.522 kb on - strand, within CA264_09875 at 2298.524 kb on + strand, within CA264_09875 at 2298.524 kb on + strand, within CA264_09875 at 2298.530 kb on + strand, within CA264_09875 at 2298.597 kb on + strand, within CA264_09875 at 2298.599 kb on + strand, within CA264_09875 at 2298.600 kb on - strand, within CA264_09875 at 2298.603 kb on + strand, within CA264_09875 at 2298.604 kb on - strand, within CA264_09875 at 2298.604 kb on - strand, within CA264_09875 at 2298.617 kb on + strand, within CA264_09875 at 2298.617 kb on + strand, within CA264_09875 at 2298.711 kb on + strand, within CA264_09875 at 2298.711 kb on + strand, within CA264_09875 at 2298.744 kb on + strand, within CA264_09875 at 2298.745 kb on - strand, within CA264_09875 at 2298.752 kb on + strand, within CA264_09875 at 2298.752 kb on + strand, within CA264_09875 at 2298.753 kb on - strand, within CA264_09875 at 2298.753 kb on - strand, within CA264_09875 at 2298.988 kb on - strand, within CA264_09875 at 2299.001 kb on - strand, within CA264_09875 at 2299.001 kb on - strand, within CA264_09875 at 2299.076 kb on + strand, within CA264_09875 at 2299.076 kb on - strand, within CA264_09875
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM remove 2,296,502 + CA264_09865 0.77 -1.2 2,296,502 + CA264_09865 0.77 +0.6 2,296,658 - CA264_09865 0.83 +1.3 2,296,789 + CA264_09865 0.88 -0.5 2,296,789 + CA264_09865 0.88 -1.3 2,296,854 - -1.2 2,296,858 + -2.0 2,297,096 + +0.1 2,297,151 - -0.6 2,297,151 - -3.2 2,297,184 + -0.8 2,297,208 + -0.9 2,297,217 + -0.5 2,297,217 + -0.2 2,297,218 - +0.4 2,297,218 - -0.8 2,297,222 + +1.4 2,297,223 - +0.1 2,297,255 + -1.1 2,297,256 - -0.4 2,297,257 + -1.6 2,297,258 - -0.2 2,297,283 - -0.7 2,297,283 - +0.2 2,297,284 + -1.3 2,297,285 - -0.1 2,297,290 + -0.6 2,297,386 - -1.3 2,297,388 + -2.2 2,297,481 + CA264_09870 0.15 -1.4 2,297,521 + CA264_09870 0.20 +0.4 2,297,522 - CA264_09870 0.20 -0.4 2,297,522 - CA264_09870 0.20 -1.0 2,297,542 + CA264_09870 0.23 -0.4 2,297,542 + CA264_09870 0.23 +1.5 2,297,542 + CA264_09870 0.23 -0.2 2,297,698 - CA264_09870 0.43 +0.7 2,297,698 - CA264_09870 0.43 -1.3 2,297,822 - CA264_09870 0.59 -1.4 2,297,830 - CA264_09870 0.60 +0.1 2,297,834 - CA264_09870 0.60 +0.1 2,297,876 + CA264_09870 0.66 -0.4 2,297,876 + CA264_09870 0.66 -0.7 2,297,877 - CA264_09870 0.66 -1.6 2,297,880 + CA264_09870 0.66 -0.4 2,297,927 - CA264_09870 0.72 +0.6 2,298,039 + CA264_09870 0.87 -1.0 2,298,039 + CA264_09870 0.87 -1.0 2,298,039 + CA264_09870 0.87 -2.2 2,298,040 - CA264_09870 0.87 +0.2 2,298,040 - CA264_09870 0.87 -0.4 2,298,040 - CA264_09870 0.87 -0.3 2,298,098 + +0.1 2,298,099 - +2.0 2,298,104 + -1.1 2,298,106 + +0.6 2,298,142 - -0.3 2,298,200 + -0.4 2,298,213 + -0.8 2,298,213 + +0.4 2,298,221 + -1.8 2,298,284 + -0.1 2,298,285 - -0.9 2,298,320 - +0.2 2,298,320 - -0.4 2,298,364 + +1.0 2,298,377 + -0.7 2,298,449 + CA264_09875 0.10 +1.2 2,298,450 - CA264_09875 0.11 -0.5 2,298,521 + CA264_09875 0.15 +0.9 2,298,521 + CA264_09875 0.15 -1.4 2,298,522 - CA264_09875 0.15 -0.1 2,298,524 + CA264_09875 0.15 -0.2 2,298,524 + CA264_09875 0.15 +0.1 2,298,530 + CA264_09875 0.16 -0.5 2,298,597 + CA264_09875 0.20 +0.4 2,298,599 + CA264_09875 0.20 +0.2 2,298,600 - CA264_09875 0.20 -0.8 2,298,603 + CA264_09875 0.20 +0.5 2,298,604 - CA264_09875 0.20 -0.8 2,298,604 - CA264_09875 0.20 +0.9 2,298,617 + CA264_09875 0.21 +0.5 2,298,617 + CA264_09875 0.21 +0.0 2,298,711 + CA264_09875 0.27 -0.3 2,298,711 + CA264_09875 0.27 -0.1 2,298,744 + CA264_09875 0.29 +0.4 2,298,745 - CA264_09875 0.29 +1.0 2,298,752 + CA264_09875 0.30 -0.7 2,298,752 + CA264_09875 0.30 -0.4 2,298,753 - CA264_09875 0.30 +0.8 2,298,753 - CA264_09875 0.30 -0.3 2,298,988 - CA264_09875 0.45 -0.1 2,299,001 - CA264_09875 0.45 -1.1 2,299,001 - CA264_09875 0.45 -0.0 2,299,076 + CA264_09875 0.50 -1.1 2,299,076 - CA264_09875 0.50 -0.6
Or see this region's nucleotide sequence