Experiment: m.b. Lomefloxacin 0.004 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_09395 and CA264_09400 are separated by 71 nucleotides CA264_09400 and CA264_09405 are separated by 88 nucleotides CA264_09405 and CA264_09410 are separated by 280 nucleotides
CA264_09395: CA264_09395 - hypothetical protein, at 2,196,749 to 2,197,372
_09395
CA264_09400: CA264_09400 - hypothetical protein, at 2,197,444 to 2,197,671
_09400
CA264_09405: CA264_09405 - hypothetical protein, at 2,197,760 to 2,197,993
_09405
CA264_09410: CA264_09410 - recombinase RecQ, at 2,198,274 to 2,200,187
_09410
Position (kb)
2197
2198 Strain fitness (log2 ratio)
-1
0
1 at 2196.825 kb on + strand, within CA264_09395 at 2196.826 kb on - strand, within CA264_09395 at 2196.946 kb on - strand, within CA264_09395 at 2197.036 kb on + strand, within CA264_09395 at 2197.056 kb on + strand, within CA264_09395 at 2197.127 kb on + strand, within CA264_09395 at 2197.129 kb on + strand, within CA264_09395 at 2197.129 kb on + strand, within CA264_09395 at 2197.129 kb on + strand, within CA264_09395 at 2197.130 kb on - strand, within CA264_09395 at 2197.213 kb on + strand, within CA264_09395 at 2197.337 kb on - strand at 2197.367 kb on + strand at 2197.367 kb on + strand at 2197.372 kb on + strand at 2197.372 kb on + strand at 2197.373 kb on - strand at 2197.373 kb on - strand at 2197.444 kb on - strand at 2197.512 kb on - strand, within CA264_09400 at 2197.519 kb on + strand, within CA264_09400 at 2197.519 kb on + strand, within CA264_09400 at 2197.520 kb on - strand, within CA264_09400 at 2197.520 kb on - strand, within CA264_09400 at 2197.575 kb on + strand, within CA264_09400 at 2197.575 kb on + strand, within CA264_09400 at 2197.576 kb on - strand, within CA264_09400 at 2197.642 kb on + strand, within CA264_09400 at 2197.734 kb on + strand at 2197.734 kb on + strand at 2197.738 kb on + strand at 2197.739 kb on - strand at 2197.745 kb on - strand at 2197.755 kb on + strand at 2197.755 kb on + strand at 2197.777 kb on - strand at 2197.842 kb on + strand, within CA264_09405 at 2197.842 kb on + strand, within CA264_09405 at 2197.842 kb on + strand, within CA264_09405 at 2197.842 kb on + strand, within CA264_09405 at 2197.897 kb on + strand, within CA264_09405 at 2197.912 kb on + strand, within CA264_09405 at 2197.913 kb on - strand, within CA264_09405 at 2197.914 kb on + strand, within CA264_09405 at 2197.914 kb on + strand, within CA264_09405 at 2197.947 kb on + strand, within CA264_09405 at 2197.948 kb on - strand, within CA264_09405 at 2197.991 kb on + strand at 2197.991 kb on + strand at 2198.018 kb on - strand at 2198.019 kb on + strand at 2198.020 kb on - strand at 2198.095 kb on + strand at 2198.096 kb on - strand at 2198.112 kb on + strand at 2198.272 kb on + strand at 2198.312 kb on + strand at 2198.312 kb on + strand at 2198.313 kb on - strand at 2198.404 kb on + strand at 2198.404 kb on + strand at 2198.404 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM remove 2,196,825 + CA264_09395 0.12 +0.5 2,196,826 - CA264_09395 0.12 -0.6 2,196,946 - CA264_09395 0.32 -1.2 2,197,036 + CA264_09395 0.46 -0.9 2,197,056 + CA264_09395 0.49 +0.0 2,197,127 + CA264_09395 0.61 -1.6 2,197,129 + CA264_09395 0.61 -0.7 2,197,129 + CA264_09395 0.61 +1.5 2,197,129 + CA264_09395 0.61 -0.8 2,197,130 - CA264_09395 0.61 -1.1 2,197,213 + CA264_09395 0.74 -1.5 2,197,337 - +0.1 2,197,367 + +0.9 2,197,367 + +0.9 2,197,372 + -0.4 2,197,372 + -0.9 2,197,373 - -1.2 2,197,373 - -0.1 2,197,444 - -0.5 2,197,512 - CA264_09400 0.30 -0.7 2,197,519 + CA264_09400 0.33 +1.1 2,197,519 + CA264_09400 0.33 +0.1 2,197,520 - CA264_09400 0.33 -0.7 2,197,520 - CA264_09400 0.33 -1.0 2,197,575 + CA264_09400 0.57 -0.7 2,197,575 + CA264_09400 0.57 +0.4 2,197,576 - CA264_09400 0.58 -0.3 2,197,642 + CA264_09400 0.87 -1.4 2,197,734 + -1.5 2,197,734 + -0.4 2,197,738 + -1.0 2,197,739 - -0.3 2,197,745 - -0.0 2,197,755 + -1.3 2,197,755 + +0.5 2,197,777 - -0.6 2,197,842 + CA264_09405 0.35 +1.2 2,197,842 + CA264_09405 0.35 -0.8 2,197,842 + CA264_09405 0.35 +0.8 2,197,842 + CA264_09405 0.35 +0.5 2,197,897 + CA264_09405 0.59 +1.0 2,197,912 + CA264_09405 0.65 -0.1 2,197,913 - CA264_09405 0.65 -1.0 2,197,914 + CA264_09405 0.66 -0.4 2,197,914 + CA264_09405 0.66 -0.4 2,197,947 + CA264_09405 0.80 -0.5 2,197,948 - CA264_09405 0.80 +0.7 2,197,991 + -0.5 2,197,991 + -0.5 2,198,018 - -0.2 2,198,019 + -0.9 2,198,020 - -0.3 2,198,095 + +1.1 2,198,096 - -0.0 2,198,112 + +0.1 2,198,272 + +0.8 2,198,312 + -1.7 2,198,312 + -0.8 2,198,313 - +0.2 2,198,404 + -0.8 2,198,404 + -0.9 2,198,404 + -0.8
Or see this region's nucleotide sequence